About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11451HEPARAN SULFATE SULFOTRANSFERASE
HS11452ANTIGEN BSP, PUTATIVE-RELATED
HS11453ACID PHOSPHATASE-RELATED
HS11454TITIN
HS11455
HS11456B-BOX DOMAIN CONTAINING
HS11457B-BOX DOMAIN CONTAINING
HS11458PHOSPHOINOSITOL 3-PHOSPHATE-BINDING PROTEIN
HS11459LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
HS11460REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS11461FIBROBLAST GROWTH FACTOR
HS11462VOLTAGE-GATED POTASSIUM CHANNEL
HS11463
HS11464VOLTAGE-GATED POTASSIUM CHANNEL
HS11465RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
HS11466PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P
HS11467UNCHARACTERIZED
HS11468CYTOKINE RECEPTOR
HS11469FERRITIN
HS11470SYNAPTOTAGMIN
HS11471DYNEIN ASSEMBLY FACTOR 3, AXONEMAL
HS11472TROPONIN T
HS11473ASTEROID PROTEIN
HS11474CARNITINE O-ACYLTRANSFERASE
HS11475MAP/MICROTUBULE AFFINITY-REGULATING KINASE
HS11476UNCHARACTERIZED
HS11477INTERFERON REGULATORY FACTOR
HS11478SYNEMBRYN
HS11479ADRENOMEDULLIN, ADM
HS11480TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
HS11481HISTIDINE-RICH CALCIUM-BINDING PROTEIN-RELATED
HS11482HISTIDINE-RICH CALCIUM-BINDING PROTEIN-RELATED
HS11483ACROSIN-RELATED
HS11484CARBONIC ANHYDRASE
HS11485CARBONIC ANHYDRASE
HS11486MATRIX METALLOPROTEINASE
HS11487PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS11488TRANSMEMBRANE PROTEASE SERINE
HS11489MITOGEN-ACTIVATED PROTEIN KINASE
HS11490VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1
HS11491INTEGRIN ALPHA
HS11492FRUCTOSE-BISPHOSPHATE ALDOLASE
HS11493POL PROTEIN
HS11494ENDONUCLEASE
HS11495TRANSPOSON TY3-I GAG-POL POLYPROTEIN
HS11496
HS11497ACROSIN-RELATED
HS11498TAPASIN
HS11499
HS11500
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