About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2329 2330 2331 2332 2333 2334 2335 2336 2337 2338 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8044051.1HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN
CAI8044052.1-
CAI8044053.1-
CAI8044054.1SLR1870 PROTEIN
CAI8044055.1TYPE III PANTOTHENATE KINASE
CAI8044056.1TYPE III PANTOTHENATE KINASE
CAI8044057.1TYPE III PANTOTHENATE KINASE
CAI8044058.1HOMO-OLIGOMERIC FLAVIN CONTAINING CYS DECARBOXYLASE FAMILY
CAI8044059.1GLL3345 PROTEIN
CAI8044060.1TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL
CAI8044061.1AMINOBENZOATE/ANTHRANILATE SYNTHASE
CAI8044062.1MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED
CAI8044063.1ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE
CAI8044064.1TRYPTOPHAN BIOSYNTHESIS PROTEIN
CAI8044065.1HISTIDINE TRIAD HIT PROTEIN
CAI8044066.1-
CAI8044067.1-
CAI8044068.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8044069.1SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE
CAI8044070.1THIAMINE PYROPHOSPHATE ENZYMES
TOP