About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8044191.1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED
CAI8044192.1PROTEIN FAM72A-RELATED
CAI8044193.1-
CAI8044195.1TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12
CAI8044194.1-
CAI8044196.1TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12
CAI8044198.1UNCHARACTERIZED
CAI8044199.1UNCHARACTERIZED
CAI8044197.1-
CAI8044200.1UNCHARACTERIZED
CAI8044201.1NUCLEAR PROTEIN E3-3
CAI8044202.1ENDOPLASMIC RETICULUM MULTISPAN TRANSMEMBRANE PROTEIN-RELATED
CAI8044203.1-
CAI8044204.1AP ENDONUCLEASE
CAI8044205.1AP ENDONUCLEASE
CAI8044209.1LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN
CAI8044207.1LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN
CAI8044208.1LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN
CAI8044206.1LAMINA-ASSOCIATED POLYPEPTIDE THYMOPOIETIN
CAI8044210.1PX SERINE/THREONINE KINASE PXK
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