About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2442 2443 2444 2445 2446 2447 2448 2449 2450 2451 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8046311.1PEPTIDASE S12
CAI8046312.1STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
CAI8046313.1STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL
CAI8046314.1LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE
CAI8046315.1CYSTEINYL-TRNA SYNTHETASE
CAI8046316.1SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE
CAI8046317.1BCDNA.GH03377
CAI8046318.1ENOYL-COA HYDRATASE
CAI8046319.1ANTITOXIN HIGA-1
CAI8046324.1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
CAI8046323.1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
CAI8046322.1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
CAI8046321.1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
CAI8046320.1IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7
CAI8046325.1HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED
CAI8046326.1-
CAI8046327.1-
CAI8046328.1UBIQUITIN
CAI8046329.1NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4
CAI8046330.1NADH DEHYDROGENASE
TOP