About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8046751.1-
CAI8046752.1BLR5612 PROTEIN
CAI8046753.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
CAI8046754.1-
CAI8046755.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
CAI8046756.1LEUCINE-SPECIFIC-BINDING PROTEIN
CAI8046757.1F-BOX ONLY PROTEIN 22
CAI8046758.1SLR1406 PROTEIN
CAI8046759.1METHYLMALONYL-COA EPIMERASE
CAI8046761.1PHOSPHOENOLPYRUVATE CARBOXYLASE
CAI8046760.1PHOSPHOENOLPYRUVATE CARBOXYLASE
CAI8046762.1ALCOHOL DEHYDROGENASE
CAI8046763.1-
CAI8046764.1-
CAI8046765.1PROTEIN SIDEKICK
CAI8046766.1-
CAI8046767.1-
CAI8046768.1FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD
CAI8046769.1FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE SLYD
CAI8046770.1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
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