About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8048411.1AP COMPLEX SUBUNIT MU
CAI8048412.1LOC361192
CAI8048413.1PROLYL-TRNA SYNTHETASE
CAI8048414.1PROLYL-TRNA SYNTHETASE
CAI8048415.1PROLYL-TRNA SYNTHETASE
CAI8048416.1GLUTAMINE-TRNA LIGASE
CAI8048417.1PROLYL-TRNA SYNTHETASE
CAI8048418.1GLUTAMINE-TRNA LIGASE
CAI8048419.1GLUTAMINE-TRNA LIGASE
CAI8048420.1LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL
CAI8048421.1LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL
CAI8048422.1MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1
CAI8048423.1MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A
CAI8048424.1STEROL ISOMERASE
CAI8048425.1FATTY ACID ACYL TRANSFERASE-RELATED
CAI8048426.1FATTY ACID ACYL TRANSFERASE-RELATED
CAI8048427.1ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12
CAI8048428.1SERINE-THREONINE PROTEIN KINASE
CAI8048429.1SERINE-THREONINE PROTEIN KINASE
CAI8048430.1SERINE-THREONINE PROTEIN KINASE
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