About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 3003 3004 3005 3006 3007 3008 3009 3010 3011 3012 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8057531.1KH DOMAIN CONTAINING RNA BINDING PROTEIN
CAI8057534.1PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE
CAI8057533.1PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE
CAI8057532.1PEROXISOMAL TRANS-2-ENOYL-COA REDUCTASE
CAI8057535.1-
CAI8057537.1CHARGED MULTIVESICULAR BODY PROTEIN
CAI8057536.1CHARGED MULTIVESICULAR BODY PROTEIN
CAI8057538.1-
CAI8057539.1NGFI-A BINDING PROTEIN
CAI8057540.1NGFI-A BINDING PROTEIN
CAI8057541.1CONDENSIN-2 COMPLEX SUBUNIT G2
CAI8057543.1SERINE HYDROXYMETHYLTRANSFERASE
CAI8057542.1SERINE HYDROXYMETHYLTRANSFERASE
CAI8057544.1SERINE HYDROXYMETHYLTRANSFERASE
CAI8057545.1CYTOCHROME P450 FAMILY 7
CAI8057548.1CENTAURIN/ARF
CAI8057550.1CENTAURIN/ARF
CAI8057549.1CENTAURIN-GAMMA-1A
CAI8057551.1CENTAURIN/ARF
CAI8057552.1CENTAURIN/ARF
TOP