About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG01356.1
RPACG01357.1
RPACG01358.1
RPACG01359.1TRANSFERASE, PUTATIVE-RELATED
RPACG01360.1OS10G0105400 PROTEIN
RPACG01361.1STANNIOCALCIN
RPACG01362.1
RPACG01363.1OS10G0105400 PROTEIN
RPACG01364.1OS10G0105400 PROTEIN
RPACG01364.2
RPACG01365.1OS10G0105400 PROTEIN
RPACG01366.1OS10G0105400 PROTEIN
RPACG01367.1
RPACG01368.1B-BOX DOMAIN CONTAINING
RPACG01368.2
RPACG01369.1
RPACG01370.1RIIA DOMAIN-CONTAINING PROTEIN 1
RPACG01371.1
RPACG01372.1-
RPACG01373.1METHYLTRANSFERASE-RELATED
RPACG01374.1BETA LACTAMASE DOMAIN
RPACG01375.1MITOCHONDRIAL FISSION PROCESS PROTEIN 1
RPACG01376.1ATP-DEPENDENT RNA HELICASE
RPACG01377.1AMINO ACID TRANSPORTER
RPACG01378.1
RPACG01379.1
RPACG01380.1
RPACG01381.1
RPACG01382.1-
RPACG01383.1COLLAGEN ALPHA
RPACG01384.1
RPACG01385.1COLLAGEN ALPHA
RPACG01386.1COLLAGEN ALPHA
RPACG01387.1
RPACG01388.1COLLAGEN ALPHA
RPACG01388.2
RPACG01389.1
RPACG01390.1
RPACG01391.1PROTEIN CBG10425
RPACG01392.1
RPACG01393.1
RPACG01394.1
RPACG01395.1AGAP004733-PA
RPACG01396.1
RPACG01397.1
RPACG01398.1
RPACG01399.1PR DOMAIN ZINC FINGER PROTEIN
RPACG01400.1
RPACG01401.1DNAJ HOMOLOG SUBFAMILY B MEMBER 9
RPACG01402.1CEREBLON
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