About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254 the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00%21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS17251UNCHARACTERIZED
HS17252PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
HS17253EPH RECEPTOR A5
HS17254
HS17255ACID PHOSPHATASE-RELATED
HS17256MITOCHONDRIAL CARRIER PROTEIN RIM2
HS17257SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
HS17258CALSYNTENIN
HS17259
HS17260FATTY ACID BINDING PROTEIN
HS17261COATOMER
HS17262MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S22
HS17263FORKHEAD BOX PROTEIN
HS17264PHOSPHATIDYLINOSITOL KINASE
HS17265
HS17266PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
HS17267BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS17268BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
HS17269CALCIUM-BINDING PROTEIN 39-RELATED
HS17270
HS17271INTEGRAL TRANSMEMBRANE PROTEIN 2
HS17272HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
HS17273RAB GDP/GTP EXCHANGE FACTOR
HS17274NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
HS17275MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
HS17276CONNEXIN
HS17277GLIOMA SUPPRESSOR CANDIDATE REGION GENE 2
HS17278HISTONE H3
HS17279HOMEOBOX PROTEIN
HS17280INOSITOL-TETRAKISPHOSPHATE 1-KINASE
HS17281
HS17282SERYL-TRNA SYNTHETASE
HS17283KELCH PROTEIN
HS17284F-BOX ONLY PROTEIN 34/46 FAMILY MEMBER
HS17285-
HS17286NUMB
HS17287AGAP002036-PA
HS17288HL01030P-RELATED
HS17289ENDONUCLEASE DOMAIN-CONTAINING 1 PROTEIN ENDOD1
HS17290EXPERIMENTAL AUTOIMMUNE PROSTATITIS ANTIGEN 2-RELATED
HS17291BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE
HS17292OVOCHYMASE-RELATED
HS17293NUDIX HYDROLASE
HS17294B-BOX DOMAIN CONTAINING
HS17295CEREBELLIN-RELATED
HS17296CEREBELLIN-RELATED
HS17297CALPONIN
HS17298PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
HS17299ASPARTYL PROTEASE-RELATED
HS17300T-BOX PROTEIN-RELATED
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