About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Original Description/Redescription

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Partial Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution/Locality

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000019752.1MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
ENSZWYP00000019753.1TRANSMEMBRANE PROTEIN 246
ENSZWYP00000019754.1RNA METHYLASE-RELATED
ENSZWYP00000019755.1TRANSMEMBRANE PROTEIN 246
ENSZWYP00000019756.1ALPHA-TECTORIN-RELATED
ENSZWYP00000019757.1
ENSZWYP00000019758.1MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
ENSZWYP00000019759.1SLIT HOMOLOG
ENSZWYP00000019760.1LEUCOKININ RECEPTOR-RELATED
ENSZWYP00000019761.1
ENSZWYP00000019762.1
ENSZWYP00000019763.1
ENSZWYP00000019764.1LATROPHILIN RECEPTOR-LIKE PROTEIN A
ENSZWYP00000019765.1
ENSZWYP00000019766.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
ENSZWYP00000019767.1MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
ENSZWYP00000019768.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
ENSZWYP00000019769.1RNA METHYLASE-RELATED
ENSZWYP00000019770.1SET DOMAIN-CONTAINING PROTEIN-RELATED
ENSZWYP00000019771.1
ENSZWYP00000019772.1
ENSZWYP00000019773.1
ENSZWYP00000019774.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
ENSZWYP00000019775.1MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER
ENSZWYP00000019776.1
ENSZWYP00000019777.1ANNEXIN
ENSZWYP00000019778.1TRNA DIMETHYLALLYLTRANSFERASE
ENSZWYP00000019779.1
ENSZWYP00000019780.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
ENSZWYP00000019781.1
ENSZWYP00000019782.1
ENSZWYP00000019783.1
ENSZWYP00000019784.1
ENSZWYP00000019785.1
ENSZWYP00000019786.1
ENSZWYP00000019787.1
ENSZWYP00000019788.1TRNA DIMETHYLALLYLTRANSFERASE
ENSZWYP00000019789.1LIPASE
ENSZWYP00000019790.1
ENSZWYP00000019791.1ANKYRIN REPEAT DOMAIN 40
ENSZWYP00000019792.1
ENSZWYP00000019793.1ANTI-SILENCING PROTEIN 1
ENSZWYP00000019794.1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
ENSZWYP00000019795.1ANKYRIN REPEAT DOMAIN 40
ENSZWYP00000019796.1
ENSZWYP00000019797.1
ENSZWYP00000019798.1YNEIN REGULATORY COMPLEX SUBUNIT 5
ENSZWYP00000019799.1
ENSZWYP00000019800.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
ENSZWYP00000019801.1
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