Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_029792-T1 | NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTF |
LLU|FUN_029793-T1 | OS10G0105400 PROTEIN |
LLU|FUN_029794-T1 | |
LLU|FUN_029795-T1 | |
LLU|FUN_029796-T1 | |
LLU|FUN_029797-T1 | DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER |
LLU|FUN_029798-T1 | SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE |
LLU|FUN_029799-T1 | COMM DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_029800-T1 | C1ORF73 PROTEIN |
LLU|FUN_029801-T1 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
LLU|FUN_029802-T1 | CHAPERONIN |
LLU|FUN_029803-T1 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
LLU|FUN_029804-T1 | NUCLEAR HORMONE RECEPTOR |
LLU|FUN_029805-T1 | EXPORTIN 1/5 |
LLU|FUN_029806-T1 | |
LLU|FUN_029807-T1 | |
LLU|FUN_029808-T1 | |
LLU|FUN_029809-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_029810-T1 | BAND 7 PROTEIN-RELATED |
LLU|FUN_029811-T1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
LLU|FUN_029812-T1 | |
LLU|FUN_029813-T1 | |
LLU|FUN_029814-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_029815-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_029816-T1 | |
LLU|FUN_029817-T1 | SERUM RESPONSE FACTOR HOMOLOG |
LLU|FUN_029818-T1 | |
LLU|FUN_029819-T1 | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN |
LLU|FUN_029820-T1 | NADH DEHYDROGENASE |
LLU|FUN_029821-T1 | |
LLU|FUN_029822-T1 | |
LLU|FUN_029823-T1 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 15 |
LLU|FUN_029824-T1 | |
LLU|FUN_029825-T1 | KINESIN LIGHT CHAIN |
LLU|FUN_029826-T1 | DNA REPAIR PROTEIN COMPLEMENTING XP-A CELLS |
LLU|FUN_029827-T1 | TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 2 |
LLU|FUN_029828-T1 | ANKYRIN REPEAT PROTEIN |
LLU|FUN_029829-T1 | |
LLU|FUN_029830-T1 | DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE DSOR1-LIKE PROTEIN |
LLU|FUN_029831-T1 | |
LLU|FUN_029832-T1 | |
LLU|FUN_029833-T1 | |
LLU|FUN_029834-T1 | |
LLU|FUN_029835-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029836-T1 | - |
LLU|FUN_029837-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029838-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029839-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029840-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_029841-T1 |