About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG02934.1
RPACG02935.1
RPACG02936.1RETICULOCALBIN
RPACG02937.1CRUMBS FAMILY MEMBER
RPACG02938.1CRUMBS FAMILY MEMBER
RPACG02939.1
RPACG02940.1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
RPACG02941.1ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 15
RPACG02942.1CYCLIN
RPACG02943.1CONDENSIN
RPACG02943.2
RPACG02944.1
RPACG02944.2
RPACG02945.1
RPACG02946.1
RPACG02947.1
RPACG02948.1
RPACG02949.1
RPACG02950.1
RPACG02951.1
RPACG02952.1
RPACG02953.1
RPACG02954.1
RPACG02955.1
RPACG02956.1
RPACG02956.2
RPACG02957.1
RPACG02958.1RIKEN CDNA D130052B06 GENE
RPACG02959.1
RPACG02960.1
RPACG02961.1TESTIS-EXPRESSED PROTEIN 15
RPACG02962.1
RPACG02963.1
RPACG02964.1QUIESCIN Q6-RELATED SULFHYDRYL OXIDASE
RPACG02965.1
RPACG02966.1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
RPACG02967.1
RPACG02968.1
RPACG02969.1
RPACG02969.2
RPACG02969.3
RPACG02970.1
RPACG02971.1
RPACG02972.1
RPACG02973.1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
RPACG02974.1WD40 REPEAT PROTEIN
RPACG02975.1RNA POLYMERASE II SUBUNIT A C-TERMINAL DOMAIN PHOSPHATASE
RPACG02976.1LARGE SUBUNIT GTPASE 1 HOMOLOG-RELATED
RPACG02977.1UNCHARACTERIZED
RPACG02977.2
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