About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_040232-T1
LLU|FUN_040233-T1
LLU|FUN_040234-T1
LLU|FUN_040235-T1
LLU|FUN_040236-T1
LLU|FUN_040237-T1
LLU|FUN_040238-T1
LLU|FUN_040239-T1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
LLU|FUN_040240-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17
LLU|FUN_040241-T1E3 UBIQUITIN-PROTEIN LIGASE RAD18
LLU|FUN_040242-T1TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER
LLU|FUN_040243-T1RNA RECOGNITION MOTIF-CONTAINING
LLU|FUN_040244-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_040245-T16-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE
LLU|FUN_040246-T1
LLU|FUN_040247-T1HIV-INDUCED PROTEIN-7-LIKE PROTEASE
LLU|FUN_040248-T1
LLU|FUN_040249-T1COMM DOMAIN CONTAINING PROTEIN 2
LLU|FUN_040250-T1ALMS1-RELATED
LLU|FUN_040251-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_040252-T1FIBRINOGEN ALPHA CHAIN
LLU|FUN_040253-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_040254-T1
LLU|FUN_040255-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_040256-T1ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_040257-T1INTELECTIN
LLU|FUN_040258-T1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_040259-T1
LLU|FUN_040260-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_040261-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
LLU|FUN_040262-T1SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
LLU|FUN_040263-T1SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER
LLU|FUN_040264-T1F-BOX ONLY PROTEIN 4
LLU|FUN_040265-T1INTERLEUKIN-17 RECEPTOR
LLU|FUN_040266-T1PROTEIN ATP6V1FNB-LIKE
LLU|FUN_040267-T1PROTEIN ATP6V1FNB-LIKE
LLU|FUN_040268-T1
LLU|FUN_040269-T1PROTEIN ATP6V1FNB-LIKE
LLU|FUN_040270-T1
LLU|FUN_040271-T1
LLU|FUN_040272-T1BICAUDAL D FAMILY MEMBER
LLU|FUN_040273-T1N-TERMINAL ACETYLTRANSFERASE
LLU|FUN_040274-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12
LLU|FUN_040275-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_040276-T1
LLU|FUN_040277-T1
LLU|FUN_040278-T1
LLU|FUN_040279-T1-
LLU|FUN_040280-T1-
LLU|FUN_040281-T1-
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