Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_040232-T1 | |
LLU|FUN_040233-T1 | |
LLU|FUN_040234-T1 | |
LLU|FUN_040235-T1 | |
LLU|FUN_040236-T1 | |
LLU|FUN_040237-T1 | |
LLU|FUN_040238-T1 | |
LLU|FUN_040239-T1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
LLU|FUN_040240-T1 | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM-17 |
LLU|FUN_040241-T1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
LLU|FUN_040242-T1 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER |
LLU|FUN_040243-T1 | RNA RECOGNITION MOTIF-CONTAINING |
LLU|FUN_040244-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_040245-T1 | 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE |
LLU|FUN_040246-T1 | |
LLU|FUN_040247-T1 | HIV-INDUCED PROTEIN-7-LIKE PROTEASE |
LLU|FUN_040248-T1 | |
LLU|FUN_040249-T1 | COMM DOMAIN CONTAINING PROTEIN 2 |
LLU|FUN_040250-T1 | ALMS1-RELATED |
LLU|FUN_040251-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_040252-T1 | FIBRINOGEN ALPHA CHAIN |
LLU|FUN_040253-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_040254-T1 | |
LLU|FUN_040255-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_040256-T1 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_040257-T1 | INTELECTIN |
LLU|FUN_040258-T1 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_040259-T1 | |
LLU|FUN_040260-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_040261-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2 |
LLU|FUN_040262-T1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
LLU|FUN_040263-T1 | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER |
LLU|FUN_040264-T1 | F-BOX ONLY PROTEIN 4 |
LLU|FUN_040265-T1 | INTERLEUKIN-17 RECEPTOR |
LLU|FUN_040266-T1 | PROTEIN ATP6V1FNB-LIKE |
LLU|FUN_040267-T1 | PROTEIN ATP6V1FNB-LIKE |
LLU|FUN_040268-T1 | |
LLU|FUN_040269-T1 | PROTEIN ATP6V1FNB-LIKE |
LLU|FUN_040270-T1 | |
LLU|FUN_040271-T1 | |
LLU|FUN_040272-T1 | BICAUDAL D FAMILY MEMBER |
LLU|FUN_040273-T1 | N-TERMINAL ACETYLTRANSFERASE |
LLU|FUN_040274-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12 |
LLU|FUN_040275-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_040276-T1 | |
LLU|FUN_040277-T1 | |
LLU|FUN_040278-T1 | |
LLU|FUN_040279-T1 | - |
LLU|FUN_040280-T1 | - |
LLU|FUN_040281-T1 | - |