About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG03633.1
RPACG03634.1
RPACG03635.1
RPACG03636.1
RPACG03637.1TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 6-RELATED
RPACG03638.1SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL
RPACG03639.1
RPACG03639.2
RPACG03640.1SI:DKEY-57N24.6
RPACG03641.1
RPACG03642.1
RPACG03643.1
RPACG03644.1
RPACG03645.1
RPACG03646.1
RPACG03647.1SPERM-SPECIFIC FAMILY, CLASS Q
RPACG03648.1
RPACG03649.1
RPACG03650.1
RPACG03651.1PDZ DOMAIN CONTAINING RING FINGER PROTEIN 3, 4
RPACG03652.1
RPACG03652.2
RPACG03653.1ACTIN
RPACG03654.1ACETYLTRANSFERASE
RPACG03655.1
RPACG03656.1
RPACG03657.1PPP4R2-RELATED PROTEIN
RPACG03658.1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
RPACG03659.1ATAXIN-10
RPACG03660.1OS05G0565100 PROTEIN
RPACG03661.1SRCR DOMAIN-CONTAINING PROTEIN
RPACG03662.1
RPACG03663.1
RPACG03664.1SRCR DOMAIN-CONTAINING PROTEIN
RPACG03665.1MUSKELIN
RPACG03666.1
RPACG03667.1
RPACG03668.1MUSKELIN
RPACG03669.1CARNITINE O-ACYLTRANSFERASE
RPACG03670.1ZINC FINGER PROTEIN
RPACG03671.1
RPACG03672.1NUCLEAR PROTEIN E3-3
RPACG03673.1
RPACG03674.1HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H
RPACG03675.1DYSTROGLYCAN-RELATED
RPACG03676.1
RPACG03677.1YIPPEE DOMAIN-CONTAINING PROTEIN
RPACG03677.2
RPACG03677.3
RPACG03677.4
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