About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.

Classification

Animalia (Kingdom); Mollusca (Phylum); Bivalvia (Class); Autobranchia (Subclass); Pteriomorphia (Infraclass); Mytilida (Order); Mytiloidea (Superfamily); Modiolidae (Family); Bathymodiolinae (Subfamily); Gigantidas (Genus); Gigantidas platifrons (Species)

Original Name

Bathymodiolus platifrons Hashimoto & Okutani, 1994

Original description

(Hashimoto et al., 1994)

Partial Description

Shell large, up to 115 mm long, rather thick and solid, inflated,modioliform, oblong rounded-triangular in lateralview, equivalve, inequilateral,heightllengthratio O.50-O.68, width/length ratio O.34-O.47. Umbones prosogyrated, often nearly subterminal, but mostly on the same plane with anterior end of the shell. Umbonal ridge prominent. Anterior end rounded, dorsalmargin slightly convex, postero-dorsal corner round, postero-dorsal margin slightly convex, posterior margin broadly rounded, ventral margin slightly concave or nearly straight, External surface smooth, dull white beneath periostracum, with fine growth linesin juvenileand subadult, but with developed irregularlyspaced growth lirae in adults. Periostracum yellow in juvenileand subadult specimens, but usually yellowish straw, yellow-brown or dark brown in adult specimens, or dark russet in.some specimens. No periostracalhairs present.

Etymology

Ptati means flatand .frons forehead. Because of rather truncated appearance in frontal region of the shell, the name was chosen.

Distribution/locality

Okinoyama Bank and off Hatsushima Sitein Sagami Bay, the Iheya Ridge and the Izena Caldron in the mid-Okinawa Trough, The specimens attached to outcrops with byssus around diffused vents


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30 343.3/12.634.347.9333,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_17856-2.4FRIZZLED
Bpl_scaf_17856-3.22E3 UBIQUITIN-PROTEIN LIGASE MIB2
Bpl_scaf_17856-3.27E3 UBIQUITIN-PROTEIN LIGASE MIB2
Bpl_scaf_17856-4.5BREAST CARCINOMA AMPLIFIED SEQUENCE 3
Bpl_scaf_17856-5.12T-BOX PROTEIN-RELATED
Bpl_scaf_17856-6.13T-BOX PROTEIN-RELATED
Bpl_scaf_17856-8.5GUANINE NUCLEOTIDE EXCHANGE FACTOR
Bpl_scaf_17863-0.0
Bpl_scaf_17865-0.4UNCHARACTERIZED
Bpl_scaf_17866-0.5GLUTATHIONE S-TRANSFERASE
Bpl_scaf_17866-1.11
Bpl_scaf_17866-1.13
Bpl_scaf_17866-1.2PROTEIN CBG23764
Bpl_scaf_17866-1.8INHIBITOR OF APOPTOSIS
Bpl_scaf_17866-2.5
Bpl_scaf_17866-2.6
Bpl_scaf_17866-2.7
Bpl_scaf_17866-3.104-NITROPHENYLPHOSPHATASE-RELATED
Bpl_scaf_17866-3.6
Bpl_scaf_17866-3.9
Bpl_scaf_17870-0.2
Bpl_scaf_17872-0.5
Bpl_scaf_17876-0.3
Bpl_scaf_17877-0.4
Bpl_scaf_17877-1.16PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_17877-1.17ASPARTYL PROTEASE DDI-RELATED
Bpl_scaf_17877-1.33PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_17877-1.35PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_17877-2.11HILLARIN
Bpl_scaf_17877-2.12
Bpl_scaf_17877-2.9
Bpl_scaf_17877-3.10
Bpl_scaf_17877-3.13TRANSCRIPTION INTERMEDIARY FACTOR
Bpl_scaf_17877-3.14LEUCINE ZIPPER TRANSCRIPTION FACTOR LIKE
Bpl_scaf_17877-3.18
Bpl_scaf_17877-3.5
Bpl_scaf_17877-3.7
Bpl_scaf_17881-0.13SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
Bpl_scaf_17887-0.0
Bpl_scaf_17888-3.14
Bpl_scaf_17888-3.27
Bpl_scaf_17888-3.38
Bpl_scaf_17888-3.40
Bpl_scaf_17888-3.41
Bpl_scaf_17888-3.42OS10G0105400 PROTEIN
Bpl_scaf_17888-3.43OS10G0105400 PROTEIN
Bpl_scaf_17888-3.45OS10G0105400 PROTEIN
Bpl_scaf_17888-3.46
Bpl_scaf_17888-3.47
Bpl_scaf_17888-3.48COLLAGEN ALPHA
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