About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent～1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g1CST COMPLEX SUBUNIT CTC1
Clavulariidae_g10-
Clavulariidae_g100-
Clavulariidae_g1000POL PROTEIN
Clavulariidae_g10000-
Clavulariidae_g10001-
Clavulariidae_g10002SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g10003-
Clavulariidae_g10004ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10005-
Clavulariidae_g10006UNCHARACTERIZED
Clavulariidae_g10007-
Clavulariidae_g10008-
Clavulariidae_g10009-
Clavulariidae_g1001REVERSE TRANSCRIPTASES
Clavulariidae_g10010ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10011-
Clavulariidae_g10012RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10013RETROTRANSPOSON
Clavulariidae_g10014CXC DOMAIN-CONTAINING PROTEIN-RELATED

Comparative Genomic Information

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
GO:0016787hydrolase activityGOMolecular Function-expanded-0.032906
GO:0008417fucosyltransferase activityGOMolecular Function-expanded-0.043107
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesGOMolecular Function-expanded-0.044783
GO:0003735structural constituent of ribosomeGOMolecular Function-expanded-0.046971
GO:0045892negative regulation of transcription, DNA-templatedGOBiological Process-expanded-0.053562
GO:0004888transmembrane signaling receptor activityGOMolecular Function-expanded-0.056637
GO:0046872metal ion bindingGOMolecular Function-expanded-0.070275
GO:0008237metallopeptidase activityGOMolecular Function-expanded-0.077018
GO:0006412translationGOBiological Process-expanded-0.091488
GO:0042025host cell nucleusGOCellular Component-expanded-0.094604
GO:0005840ribosomeGOCellular Component-expanded-0.104152
GO:0006260DNA replicationGOBiological Process-expanded-0.115775
GO:0004222metalloendopeptidase activityGOMolecular Function-expanded-0.136316
GO:0003723RNA bindingGOMolecular Function-expanded-0.138668
GO:0005975carbohydrate metabolic processGOBiological Process-expanded-0.287198
GO:0007165signal transductionGOBiological Process-expanded-0.296532
GO:0048188Set1C/COMPASS complexGOCellular Component-expanded-0.308648
GO:0000155phosphorelay sensor kinase activityGOMolecular Function-expanded-0.31021
GO:0005044scavenger receptor activityGOMolecular Function-contracted-1.76E-129
GO:0005509calcium ion bindingGOMolecular Function-expanded-1.36E-09
GO:0005509calcium ion bindingGOMolecular Function-contracted-3.50E-12
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