About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05401MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
HS05402CAT EYE SYNDROME CRITICAL REGION PROTEIN 2
HS05403ADENOSINE DEAMINASE
HS05404RIB43A-RELATED
HS05405N-ACETYLGALACTOSAMINYLTRANSFERASE
HS05406NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED
HS05407DUAL SPECIFICITY PROTEIN KINASE
HS05408WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 1
HS05409VOLTAGE-GATED POTASSIUM CHANNEL
HS05410
HS05411PQ-LOOP REPEAT-CONTAINING PROTEIN 1-LIKE PROTEIN
HS05412HEAT SHOCK FACTOR BINDING PROTEIN 1
HS05413DNA TOPOISOMERASE I
HS05414-
HS05415CADHERIN-23
HS05416REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05417CYCLINS
HS05418
HS05419FRUCTOSE-2,6-BISPHOSPHATASE TIGAR
HS05420
HS05421
HS05422SUGAR TRANSPORTER
HS05423UNCHARACTERIZED
HS05424TRANSCRIPTION FACTOR E2F
HS05425ENGULFMENT AND CELL MOTILITY
HS05426UNCHARACTERIZED
HS05427CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
HS05428MATRIX METALLOPROTEINASE
HS05429ENDOGLIN/TGF-BETA RECEPTOR TYPE III
HS05430NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
HS05431UPF0428 PROTEIN CXORF56
HS05432
HS05433
HS05434STEROL DESATURASE
HS05435ANAPHASE-PROMOTING COMPLEX SUBUNIT 13
HS05436PIERCE HOMOLOG
HS05437RING FINGER AND SRY DOMAIN-CONTAINING
HS05438ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN
HS05439MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN
HS05440PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
HS05441HISTONE H2B
HS05442UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
HS05443HISTONE H4
HS05444HISTONE H2B
HS05445HISTONE H2A
HS05446HISTONE H3
HS05447
HS05448
HS05449HISTONE H2B
HS05450BARDET-BIEDL SYNDROME 2 PROTEIN
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