About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS05451BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
HS05452UPF0183 PROTEIN
HS05453ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS05454CORE-BINDING FACTOR, BETA SUBUNIT
HS05455GTP-BINDING PROTEIN ALPHA SUBUNIT
HS05456REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05457HEAT SHOCK TRANSCRIPTION FACTOR
HS05458CYTOCHROME P450 508A4-RELATED
HS05459CYTOCHROME P450 508A4-RELATED
HS05460HISTONE H4
HS05461HISTONE H2B
HS05462HISTONE H4
HS05463HISTONE H2B
HS05464HISTONE H1
HS05465HISTONE H4
HS05466HISTONE H2B
HS05467HISTONE H4
HS05468EXOSOME COMPLEX COMPONENT
HS05469ALANYL-TRNA SYNTHETASE
HS05470ALPHA-2,3-SIALYLTRANSFERASE ST3GAL I ISOFORM X1
HS05471
HS05472DNA REPAIR/RNA PROCESSING CPSF FAMILY
HS05473INTERLEUKIN-34
HS05474ATP DEPENDENT LON PROTEASE FAMILY MEMBER
HS05475
HS05476
HS05477E3 UBIQUITIN-PROTEIN LIGASE SIAH2
HS05478ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS05479DNA REPAIR/RNA PROCESSING CPSF FAMILY
HS05480N4BP1-RELATED
HS05481CEREBELLIN-RELATED
HS05482
HS05483TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
HS05484REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
HS05485NUCLEAR RECEPTOR COACTIVATOR 5-RELATED
HS05486CCR4-NOT TRANSCRIPTION COMPLEX
HS05487
HS05488UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
HS05489UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE
HS05490HISTONE H2B
HS05491HISTONE H4
HS05492HISTONE H2B
HS05493HISTONE H1
HS05494
HS05495HISTONE H2B
HS05496HISTONE H3
HS05497NEFA-INTERACTING NUCLEAR PROTEIN NIP30
HS05498COPINE
HS05499RAN GTPASE-ACTIVATING PROTEIN 1
HS05500MYOSIN HEAVY CHAIN, NON-MUSCLE
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