About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG00785.3
RPACG00786.1
RPACG00786.2
RPACG00787.1
RPACG00788.1DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
RPACG00789.1TRANSKETOLASE
RPACG00789.2
RPACG00789.3
RPACG00790.1UNCHARACTERIZED
RPACG00791.1CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
RPACG00792.1
RPACG00793.1
RPACG00794.1
RPACG00795.1TUDOR DOMAIN CONTAINING PROTEIN
RPACG00795.2
RPACG00796.1
RPACG00797.1TUDOR DOMAIN CONTAINING PROTEIN
RPACG00798.1
RPACG00799.1-
RPACG00800.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
RPACG00801.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00802.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00803.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
RPACG00804.1
RPACG00805.1CS DOMAIN-CONTAINING PROTEIN
RPACG00806.1
RPACG00807.1
RPACG00808.1
RPACG00809.1
RPACG00810.1
RPACG00811.1
RPACG00812.1YALI0C04136P
RPACG00812.2
RPACG00812.3
RPACG00813.1
RPACG00814.1
RPACG00815.1
RPACG00816.1
RPACG00817.1
RPACG00818.1
RPACG00818.2
RPACG00819.1
RPACG00820.1
RPACG00821.1
RPACG00821.2
RPACG00822.1YALI0C04136P
RPACG00822.2
RPACG00823.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00824.1MIR DOMAIN-CONTAINING PROTEIN
RPACG00825.1DOWN REGULATED IN RENAL CARCINOMA 1/TU3A
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