About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10651SI:CH211-245H14.1-RELATED
HS10652ZINC FINGER PROTEIN-RELATED
HS10653RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT
HS10654CATION EFFLUX PROTEIN/ ZINC TRANSPORTER
HS10655URIDINE KINASE
HS10656
HS10657CENTROMERE PROTEIN E
HS10658RNA HELICASE
HS10659SMALL INTEGRAL MEMBRANE PROTEIN 8
HS10660RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER
HS10661REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
HS10662RHO GUANINE EXCHANGE FACTOR-RELATED
HS10663ACTIN
HS10664T-CELL SURFACE GLYCOPROTEIN CD4
HS10665UNCHARACTERIZED
HS10666UBIQUITIN-CONJUGATING ENZYME E2
HS10667NEUROTRANSMITTER GATED ION CHANNEL
HS10668ANKYRIN REPEAT CONTAINING
HS10669CONNEXIN
HS10670ZINC FINGER PROTEIN RLF
HS10671ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
HS10672UNCHARACTERIZED
HS10673CALCIUM-SENSING RECEPTOR-RELATED
HS10674ANKYRIN DOMAIN-CONTAINING
HS10675SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS10676WD REPEAT DOMAIN 9
HS10677
HS10678ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
HS10679CHLORIDE INTRACELLULAR CHANNEL PROTEIN 6-RELATED
HS10680RUNT RELATED
HS10681OPSIN
HS10682METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
HS10683
HS10684WD REPEAT AND COILED-COIL-CONTAINING PROTEIN
HS10685MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
HS10686UBX DOMAIN CONTAINING PROTEIN
HS10687AAA DOMAIN-CONTAINING
HS10688
HS10689KELCH PROTEIN
HS10690SER/THR PROTEIN KINASE-TRB
HS10691ZINC FINGER PROTEIN
HS10692SOLUBLE NSF ATTACHMENT PROTEIN SNAP
HS10693GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE
HS10694
HS10695TRANSLATION INITIATION FACTOR EIF3-RELATED
HS10696ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
HS10697FERMITIN 2-RELATED
HS10698TGF-BETA FAMILY
HS10699PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
HS10700REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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