About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10751VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
HS10752RHO FAMILY GTPASE
HS10753PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H
HS10754AGAP002036-PA
HS10755DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED
HS10756HL01030P-RELATED
HS10757LEG1
HS10758LEG1
HS10759SYNTAXIN
HS10760CONNECTIVE TISSUE GROWTH FACTOR-RELATED
HS10761
HS10762GUANYLYL CYCLASE
HS10763
HS10764CHROMOGRANIN
HS10765PHOSPHOLIPASE B, PLB1
HS10766PHOSPHOLIPASE B, PLB1
HS10767SEL-1-LIKE PROTEIN
HS10768RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
HS10769INACTIVE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP6
HS10770SYS1
HS10771AGAP005329-PA
HS107724.1 G PROTEIN
HS10773
HS10774INOSITOL POLYPHOSPHATE KINASE
HS10775-
HS10776UNCHARACTERIZED
HS10777SMALL INDUCIBLE CYTOKINE A
HS10778EH DOMAIN
HS10779INTERFERON/INTERLEUKIN RECEPTOR
HS10780MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
HS10781RNA 2',3'-CYCLIC PHOSPHODIESTERASE
HS10782SI:CH211-245H14.1-RELATED
HS10783TRIADIN
HS10784T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED
HS10785RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
HS10786TUMOR PROTEIN D52
HS10787UNCHARACTERIZED
HS10788NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN
HS10789UNCHARACTERIZED
HS10790MCG7194, ISOFORM CRA_A
HS10791UNCHARACTERIZED
HS10792FATTY ACID ACYL TRANSFERASE-RELATED
HS10793PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44
HS10794CELL ADHESION MOLECULE
HS10795SERINE PROTEASE
HS10796CLATHRIN ASSEMBLY PROTEIN
HS10797PHOSPHOACETYLGLUCOSAMINE MUTASE
HS10798CYCLIN
HS10799METAXIN RELATED
HS10800POU DOMAIN
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