About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2317 2318 2319 2320 2321 2322 2323 2324 2325 2326 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8043811.1CHROMOSOME-PARTITIONING PROTEIN PARB-RELATED
CAI8043812.1GEO12009P1
CAI8043813.1THIOREDOXIN REDUCTASE 1-RELATED-RELATED
CAI8043814.1HISTONE DEACETYLASE HDAC1-RELATED
CAI8043815.1CCA TRNA NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL
CAI8043816.1-
CAI8043817.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
CAI8043818.13-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
CAI8043819.1MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6
CAI8043820.1SINGLE-STRANDED DNA-BINDING PROTEIN
CAI8043821.1REPLICATIVE DNA HELICASE DNAB
CAI8043822.1HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF
CAI8043823.1CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED
CAI8043824.1BIOTIN SYNTHASE
CAI8043825.1BIOTIN SYNTHASE
CAI8043826.1BIOTIN SYNTHASE
CAI8043827.1ACYL-COENZYME A THIOESTERASE PAAI
CAI8043828.1OXIDOREDUCTASE WITH IRON-SULFUR SUBUNIT
CAI8043829.1XANTHINE DEHYDROGENASE SUBUNIT C-RELATED
CAI8043830.12,4-DIENOYL-COA REDUCTASE
TOP