About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 2318 2319 2320 2321 2322 2323 2324 2325 2326 2327 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8043831.1HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF
CAI8043832.1CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED
CAI8043833.1SPERMIDINE/PUTRESCINE IMPORT ATP-BINDING PROTEIN POTA
CAI8043835.1PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT
CAI8043834.1PYRUVATE DEHYDROGENASE E1 COMPONENT BETA SUBUNIT
CAI8043836.15-OXOPROLINASE RELATED
CAI8043837.1GAMMA-GLUTAMYLPUTRESCINE SYNTHETASE
CAI8043838.1ARCHAEAL-TYPE GLUTAMATE SYNTHASE [NADPH]
CAI8043839.1SARCOSINE DEHYDROGENASE-RELATED
CAI8043840.1MALATE SYNTHASE G
CAI8043841.1MONOOXYGENASE
CAI8043842.1AMINOTRANSFERASE CLASS V
CAI8043843.1SUCCINYL-COA SYNTHETASE BETA CHAIN
CAI8043844.1SUCCINYL-COA LIGASE SUBUNIT ALPHA
CAI8043845.1-
CAI8043847.1BASIGIN RELATED
CAI8043846.1-
CAI8043848.1BASIGIN RELATED
CAI8043851.1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
CAI8043850.1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
TOP