About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8047171.1DC12-RELATED
CAI8047172.1POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED
CAI8047173.1PEPTIDASE M20
CAI8047174.1OS05G0170800 PROTEIN
CAI8047175.1LIPOPROTEIN-RELEASING SYSTEM ATP-BINDING PROTEIN LOLD
CAI8047176.1DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED
CAI8047177.1NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1
CAI8047178.1NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1
CAI8047179.1NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 NDUFV1
CAI8047180.1DED DOMAIN-CONTAINING PROTEIN
CAI8047181.1-
CAI8047182.1-
CAI8047183.1-
CAI8047184.1-
CAI8047185.1-
CAI8047187.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8047188.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8047189.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8047186.1SRCR DOMAIN-CONTAINING PROTEIN
CAI8047194.1SRCR DOMAIN-CONTAINING PROTEIN
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