About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8047654.1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
CAI8047653.1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
CAI8047652.1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
CAI8047651.1ATP-DEPENDENT RNA HELICASE RHLE-RELATED
CAI8047655.1-
CAI8047656.1CONSERVED EXPRESSED OXIDOREDUCTASE (EUROFUNG)
CAI8047657.14-HYDROXY-4-METHYL-2-OXOGLUTARATE ALDOLASE 3-RELATED
CAI8047658.1PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
CAI8047659.1BCDNA.GH03377
CAI8047660.1PEROXISOMAL SARCOSINE OXIDASE
CAI8047661.13-HEXULOSE-6-PHOSPHATE ISOMERASE
CAI8047662.13-KETO-L-GULONATE-6-PHOSPHATE DECARBOXYLASE SGBH-RELATED
CAI8047663.1MEMBRANE COMPONENT OF TRANSPORTER-RELATED
CAI8047664.1MEMBRANE COMPONENT OF TRANSPORTER-RELATED
CAI8047665.1DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA
CAI8047666.1-
CAI8047667.1DEHYDROGENASES, SHORT CHAIN
CAI8047668.1RIBOSOMAL PROTEIN S6 MODIFICATION PROTEIN
CAI8047669.1FERRITIN
CAI8047670.1-
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