About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold36.275
mRNA.BJAM.scaffold36.276SIDESTEP PROTEIN
mRNA.BJAM.scaffold36.277
mRNA.BJAM.scaffold360.2706
mRNA.BJAM.scaffold360.2707
mRNA.BJAM.scaffold360.2708SYNAPTOTAGMIN
mRNA.BJAM.scaffold3600.14159CYTOSOLIC PHOSPHOLIPASE A2
mRNA.BJAM.scaffold3600.14160IONOTROPIC RECEPTOR 20A-RELATED
mRNA.BJAM.scaffold3600.14161
mRNA.BJAM.scaffold3600.14162IONOTROPIC RECEPTOR 20A-RELATED
mRNA.BJAM.scaffold3600.1416350S RIBOSOMAL PROTEIN L21
mRNA.BJAM.scaffold3600.14164SER/THR-RICH PROTEIN T10 IN DGCR REGION
mRNA.BJAM.scaffold3600.14165MACOILIN
mRNA.BJAM.scaffold3600.14166ZINC FINGER PROTEIN
mRNA.BJAM.scaffold3600.14167POLYSERASE-RELATED
mRNA.BJAM.scaffold3600.14168
mRNA.BJAM.scaffold3600.14169
mRNA.BJAM.scaffold3602.14170SERINE PEPTIDASE S9 FAMILY MEMBER
mRNA.BJAM.scaffold3602.14171SERINE PEPTIDASE S9 FAMILY MEMBER
mRNA.BJAM.scaffold3603.14173
mRNA.BJAM.scaffold3603.14174ADIPOR/PROGESTIN RECEPTOR-RELATED
mRNA.BJAM.scaffold3603.14175STRUCTURAL CONTITUENT OF CUTICLE
mRNA.BJAM.scaffold3603.14176STRUCTURAL CONTITUENT OF CUTICLE
mRNA.BJAM.scaffold3603.14177CORONIN
mRNA.BJAM.scaffold3603.14178CORONIN
mRNA.BJAM.scaffold3603.14179
mRNA.BJAM.scaffold3604.14180
mRNA.BJAM.scaffold3605.14181DYNACTIN SUBUNIT 5
mRNA.BJAM.scaffold3605.14182ENOYL-COA HYDRATASE
mRNA.BJAM.scaffold3605.14183BTB DOMAIN TRANSCRIPTION FACTOR
mRNA.BJAM.scaffold3605.14184ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
mRNA.BJAM.scaffold3605.14185ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
mRNA.BJAM.scaffold3606.14186
mRNA.BJAM.scaffold3607.14187
mRNA.BJAM.scaffold3609.14188UBX-RELATED
mRNA.BJAM.scaffold3609.14189UBX-RELATED
mRNA.BJAM.scaffold361.2709
mRNA.BJAM.scaffold3612.14190
mRNA.BJAM.scaffold3612.14191L-THREONINE ALDOLASE-RELATED
mRNA.BJAM.scaffold3612.14192L-THREONINE ALDOLASE-RELATED
mRNA.BJAM.scaffold3612.14193UNCHARACTERIZED
mRNA.BJAM.scaffold3612.14194ETS
mRNA.BJAM.scaffold3613.14195METHYLATED-DNA--PROTEIN-CYSTEINE METHYLTRANSFERASE
mRNA.BJAM.scaffold3613.14196HSC70CB, ISOFORM G-RELATED
mRNA.BJAM.scaffold3613.14197
mRNA.BJAM.scaffold3613.14198
mRNA.BJAM.scaffold3613.14199PROGRAMMED CELL DEATH 4
mRNA.BJAM.scaffold3615.1420040S RIBOSOMAL PROTEIN S12
mRNA.BJAM.scaffold3616.14201AAA DOMAIN-CONTAINING
mRNA.BJAM.scaffold3616.14202MOLTING PROTEIN MLT-4
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