About Amblyraja radiata

The thorny skate Amblyraja radiata is a species of fish in the family Rajidae. This bottom-living skate lives in the North and south-eastern Atlantic Ocean in depths ranging from 20 to 1,000 m and water temperatures from −1 to 14 °C. It has a hard, roughly triangular snout and a tail, which is shorter than its body. It eats crustaceans, small fishes, and worms. It produces egg capsules, which hatch outside the body.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Chondrichthyes (Parvphylum); Elasmobranchii (Class); Neoselachii (Subclass); Batoidea (Infraclass); Rajiformes (Order); Rajidae (Family); Amblyraja (Genus); Amblyraja radiata (Species)

Original Name

Raja radiata Donovan, 1808

Original description

(Donovan et al., 1808)

Partial Description

Diet Crustaceans, bony fishes and polychaete worms

Distribution/locality

Greenland and Hudson Bay to South Carolina


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Amblyraja radiataChordatathorny skateHydrothermal vent～1500Tocopilla, northern Chile386614

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
sAmbRad1.1.pri2.6GbChromosome2020JAAGWR01Vertebrate Genomes ProjectPRJNA59136996.70 62,100/1,50044.5-18,474

Gene Information

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Gene IDDescription
XP_032894421.1TRANSCRIPTION INTERMEDIARY FACTOR
XP_032894422.1TRANSCRIPTION INTERMEDIARY FACTOR
XP_032894423.1TRANSCRIPTION INTERMEDIARY FACTOR
XP_032894424.1
XP_032894425.1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
XP_032894426.1INTERFERON INDUCIBLE TRANSMEMBRANE PROTEIN
XP_032894427.1INTERFERON REGULATORY FACTOR
XP_032894428.1PURINOCEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
XP_032894429.1NEL HOMOLOG
XP_032894430.1NEL HOMOLOG
XP_032894431.1CORTACTIN AND DREBRIN
XP_032894432.1
XP_032894433.1COILED-COIL DOMAIN-CONTAINING PROTEIN 73
XP_032894434.14-HYDROXYBENZOYL-COA THIOESTERASE FAMILY MEMBER
XP_032894435.1DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1
XP_032894436.1DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 1
XP_032894437.1ARL14 EFFECTOR PROTEIN
XP_032894438.1UNCHARACTERIZED
XP_032894439.1SIMILAR TO RIKEN CDNA A930018P22
XP_032894440.1ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN
XP_032894441.1RAS-ASSOCIATING DOMAIN CONTAINING PROTEIN
XP_032894442.1EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA
XP_032894443.1ETS
XP_032894444.1SYNAPTOTAGMIN
XP_032894445.1OXIDASE/PEROXIDASE
XP_032894446.1BESTROPHIN
XP_032894447.1INNER CENTROMERE PROTEIN
XP_032894448.1INNER CENTROMERE PROTEIN
XP_032894449.1
XP_032894450.1SODIUM/HYDROGEN EXCHANGER
XP_032894451.1CYTOKINE RECEPTOR
XP_032894452.1CYTOKINE RECEPTOR
XP_032894453.1CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR
XP_032894454.1SUGAR TRANSPORTER
XP_032894455.1TESTIS-SPECIFIC SERINE KINASE SUBSTRATE
XP_032894456.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
XP_032894457.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
XP_032894458.1DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
XP_032894459.1CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER
XP_032894460.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
XP_032894461.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
XP_032894462.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
XP_032894463.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
XP_032894464.1G-PROTEIN COUPLED RECEPTOR
XP_032894465.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
XP_032894466.1G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
XP_032894467.1G_PROTEIN_RECEP_F1_2 DOMAIN-CONTAINING PROTEIN
XP_032894468.12-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED
XP_032894469.1CYTOCHROME P450 508A4-RELATED
XP_032894470.1G-PROTEIN COUPLED RECEPTOR
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