The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama03910 | ASPARTYL/LYSYL-TRNA SYNTHETASE |
Ama03911 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Ama03912 | SERINE-THREONINE PROTEIN KINASE |
Ama03914 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama03915 | |
Ama03919 | UBIQUITIN-CONJUGATING ENZYME E2 |
Ama03920 | UBIQUITIN-CONJUGATING ENZYME E2 |
Ama03922 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama03930 | |
Ama03934 | MASTERMIND-LIKE |
Ama03939 | - |
Ama03940 | LEUCYL-TRNA SYNTHETASE |
Ama03941 | LY6/PLAUR DOMAIN-CONTAINING PROTEIN 6 |
Ama03942 | AD-003 - RELATED |
Ama03943 | AD-003 - RELATED |
Ama03944 | |
Ama03945 | |
Ama03947 | |
Ama03948 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama03949 | |
Ama03950 | |
Ama03951 | |
Ama03959 | |
Ama03962 | ACROSIN-RELATED |
Ama03963 | ACROSIN-RELATED |
Ama03964 | RCC1-LIKE G EXCHANGING FACTOR-LIKE PROTEIN |
Ama03966 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
Ama03967 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
Ama03968 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama03972 | |
Ama03974 | |
Ama03978 | |
Ama03987 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
Ama03989 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama03990 | |
Ama03992 | |
Ama03993 | |
Ama03995 | SHORT COILED COIL PROTEIN |
Ama03997 | |
Ama03999 | HSC70CB, ISOFORM G-RELATED |
Ama04000 | |
Ama04001 | |
Ama04002 | THAP DOMAIN PROTEIN |
Ama04003 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama04004 | ATP-DEPENDENT DNA HELICASE |
Ama04007 | |
Ama04008 | RAD54-LIKE |
Ama04009 | RAD54-LIKE |
Ama04010 | TRANSCRIPTIONAL REGULATOR ATRX |
Ama04011 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |