Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_003083-T1 | |
LLU|FUN_003084-T1 | NETRIN RECEPTOR UNC5 |
LLU|FUN_003085-T1 | |
LLU|FUN_003086-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_003087-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_003088-T1 | SARM1 |
LLU|FUN_003089-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_003090-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_003091-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_003092-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_003093-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_003094-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_003095-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_003096-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_003097-T1 | CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED |
LLU|FUN_003098-T1 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT |
LLU|FUN_003099-T1 | HISTONE H3 |
LLU|FUN_003100-T1 | HISTONE H4 |
LLU|FUN_003101-T1 | HISTONE H2B |
LLU|FUN_003102-T1 | HISTONE H2A |
LLU|FUN_003103-T1 | |
LLU|FUN_003104-T1 | |
LLU|FUN_003105-T1 | JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN |
LLU|FUN_003106-T1 | |
LLU|FUN_003107-T1 | |
LLU|FUN_003108-T1 | WD REPEAT PROTEIN |
LLU|FUN_003109-T1 | SPERMATOGENESIS-ASSOCIATED 4-RELATED |
LLU|FUN_003110-T1 | |
LLU|FUN_003111-T1 | CALCIUM BINDING PROTEIN |
LLU|FUN_003112-T1 | |
LLU|FUN_003113-T1 | |
LLU|FUN_003114-T1 | EXPRESSED PROTEIN |
LLU|FUN_003115-T1 | |
LLU|FUN_003116-T1 | |
LLU|FUN_003117-T1 | |
LLU|FUN_003118-T1 | |
LLU|FUN_003119-T1 | |
LLU|FUN_003120-T1 | KELCH PROTEIN |
LLU|FUN_003121-T1 | OS02G0202900 PROTEIN |
LLU|FUN_003122-T1 | KELCH PROTEIN |
LLU|FUN_003123-T1 | |
LLU|FUN_003124-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_003125-T1 | |
LLU|FUN_003126-T1 | |
LLU|FUN_003127-T1 | FRG1 PROTEIN |
LLU|FUN_003128-T1 | UNCHARACTERIZED |
LLU|FUN_003129-T1 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
LLU|FUN_003130-T1 | SCHLAFEN |
LLU|FUN_003131-T1 | METALLOPROTEASE TLDD |
LLU|FUN_003132-T1 | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20-RELATED |