About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_003083-T1
LLU|FUN_003084-T1NETRIN RECEPTOR UNC5
LLU|FUN_003085-T1
LLU|FUN_003086-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_003087-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_003088-T1SARM1
LLU|FUN_003089-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_003090-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_003091-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_003092-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
LLU|FUN_003093-T1POLY [ADP-RIBOSE] POLYMERASE
LLU|FUN_003094-T1POLY [ADP-RIBOSE] POLYMERASE
LLU|FUN_003095-T1POLY [ADP-RIBOSE] POLYMERASE
LLU|FUN_003096-T1POLY [ADP-RIBOSE] POLYMERASE
LLU|FUN_003097-T1CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
LLU|FUN_003098-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT
LLU|FUN_003099-T1HISTONE H3
LLU|FUN_003100-T1HISTONE H4
LLU|FUN_003101-T1HISTONE H2B
LLU|FUN_003102-T1HISTONE H2A
LLU|FUN_003103-T1
LLU|FUN_003104-T1
LLU|FUN_003105-T1JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN
LLU|FUN_003106-T1
LLU|FUN_003107-T1
LLU|FUN_003108-T1WD REPEAT PROTEIN
LLU|FUN_003109-T1SPERMATOGENESIS-ASSOCIATED 4-RELATED
LLU|FUN_003110-T1
LLU|FUN_003111-T1CALCIUM BINDING PROTEIN
LLU|FUN_003112-T1
LLU|FUN_003113-T1
LLU|FUN_003114-T1EXPRESSED PROTEIN
LLU|FUN_003115-T1
LLU|FUN_003116-T1
LLU|FUN_003117-T1
LLU|FUN_003118-T1
LLU|FUN_003119-T1
LLU|FUN_003120-T1KELCH PROTEIN
LLU|FUN_003121-T1OS02G0202900 PROTEIN
LLU|FUN_003122-T1KELCH PROTEIN
LLU|FUN_003123-T1
LLU|FUN_003124-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_003125-T1
LLU|FUN_003126-T1
LLU|FUN_003127-T1FRG1 PROTEIN
LLU|FUN_003128-T1UNCHARACTERIZED
LLU|FUN_003129-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
LLU|FUN_003130-T1SCHLAFEN
LLU|FUN_003131-T1METALLOPROTEASE TLDD
LLU|FUN_003132-T1MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20-RELATED
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