Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_003233-T1 | |
LLU|FUN_003235-T1 | |
LLU|FUN_003236-T1 | |
LLU|FUN_003237-T1 | |
LLU|FUN_003238-T1 | |
LLU|FUN_003239-T1 | |
LLU|FUN_003240-T1 | UNCHARACTERIZED |
LLU|FUN_003242-T1 | |
LLU|FUN_003243-T1 | SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED |
LLU|FUN_003244-T1 | ENHANCER OF RUDIMENTARY ERH |
LLU|FUN_003245-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_003246-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_003247-T1 | GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE |
LLU|FUN_003248-T1 | SERUM RESPONSE FACTOR HOMOLOG |
LLU|FUN_003249-T1 | RADICAL SAM PROTEINS |
LLU|FUN_003250-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_003251-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_003252-T1 | |
LLU|FUN_003253-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_003254-T1 | FER-1-LIKE |
LLU|FUN_003255-T1 | |
LLU|FUN_003256-T1 | SIGMA INTRACELLULAR RECEPTOR 2 |
LLU|FUN_003257-T1 | GEO13458P1 |
LLU|FUN_003258-T1 | SUA5 |
LLU|FUN_003259-T1 | COLLAGEN ALPHA |
LLU|FUN_003260-T1 | |
LLU|FUN_003261-T1 | |
LLU|FUN_003262-T1 | |
LLU|FUN_003263-T1 | UNCHARACTERIZED |
LLU|FUN_003264-T1 | UNCHARACTERIZED |
LLU|FUN_003265-T1 | |
LLU|FUN_003266-T1 | UNCHARACTERIZED |
LLU|FUN_003267-T1 | |
LLU|FUN_003268-T1 | UNCHARACTERIZED |
LLU|FUN_003269-T1 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
LLU|FUN_003270-T1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
LLU|FUN_003271-T1 | DNA REPAIR ENDONUCLEASE XPF |
LLU|FUN_003272-T1 | UNCHARACTERIZED |
LLU|FUN_003273-T1 | |
LLU|FUN_003274-T1 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
LLU|FUN_003275-T1 | |
LLU|FUN_003276-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_003277-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_003278-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_003279-T1 | RIBONUCLEASE |
LLU|FUN_003280-T1 | UNCHARACTERIZED |
LLU|FUN_003281-T1 | NUCLEAR RECEPTOR COACTIVATOR 5-RELATED |
LLU|FUN_003282-T1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_003283-T1 | UNCHARACTERIZED |
LLU|FUN_003284-T1 | SORTING NEXIN 20, 21 |