About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_038350-T1OVOCHYMASE-RELATED
OS493_038351-T1
OS493_038352-T1NUCLEAR PORE COMPLEX PROTEIN NUP155
OS493_038353-T1
OS493_038355-T1
OS493_038356-T1
OS493_038357-T1
OS493_038358-T1TYROSINE-PROTEIN KINASE
OS493_038359-T1
OS493_038360-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_038361-T1
OS493_038362-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_038363-T1
OS493_038364-T1
OS493_038365-T1
OS493_038366-T1DYNEIN HEAVY CHAIN
OS493_038367-T1
OS493_038368-T1DYNEIN HEAVY CHAIN FAMILY PROTEIN
OS493_038369-T1ARGININE AND GLUTAMATE-RICH PROTEIN 1
OS493_038370-T1CALCIUM BINDING PROTEINS
OS493_038371-T1
OS493_038372-T1
OS493_038373-T1
OS493_038374-T1
OS493_038376-T1
OS493_038377-T1
OS493_038378-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_038379-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
OS493_038380-T1
OS493_038381-T1
OS493_038382-T1
OS493_038383-T1
OS493_038384-T1
OS493_038385-T1
OS493_038386-T1
OS493_038387-T1
OS493_038388-T1
OS493_038389-T1
OS493_038390-T1
OS493_038391-T1PROTEIN CBG23806
OS493_038392-T1
OS493_038393-T1
OS493_038394-T1UNCHARACTERIZED
OS493_038395-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_038396-T1
OS493_038397-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_038398-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_038399-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_038400-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_038401-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
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