About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_038402-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_038403-T1TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED
OS493_038404-T1
OS493_038405-T1PHOSPHATIDYLINOSITOL KINASE
OS493_038406-T1BITESIZE, ISOFORM I
OS493_038407-T1
OS493_038408-T1PURPLE ACID PHOSPHATASE-RELATED
OS493_038409-T1PURPLE ACID PHOSPHATASE-RELATED
OS493_038410-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_038411-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_038413-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_038414-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_038415-T1
OS493_038416-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_038417-T1PURPLE ACID PHOSPHATASE-RELATED
OS493_038418-T1PURPLE ACID PHOSPHATASE-RELATED
OS493_038419-T1
OS493_038420-T1HISTIDYL-TRNA SYNTHETASE
OS493_038421-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED
OS493_038422-T1
OS493_038423-T1TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE
OS493_038424-T12,5-DIKETO-D-GLUCONIC ACID REDUCTASE
OS493_038426-T1
OS493_038427-T1
OS493_038428-T1SACSIN
OS493_038429-T1SACSIN
OS493_038430-T1SACSIN
OS493_038431-T1SACSIN
OS493_038432-T1ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
OS493_038433-T1SACSIN
OS493_038434-T1SACSIN
OS493_038435-T1SACSIN
OS493_038436-T1SACSIN
OS493_038437-T1ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
OS493_038438-T1SACSIN
OS493_038439-T1SACSIN
OS493_038440-T1SACSIN
OS493_038441-T1SACSIN
OS493_038442-T1
OS493_038443-T1
OS493_038444-T1
OS493_038445-T1
OS493_038446-T1
OS493_038447-T1
OS493_038448-T1
OS493_038449-T1
OS493_038450-T1
OS493_038451-T1EPHRIN
OS493_038452-T1
OS493_038453-T1
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