About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_038057-T1ELONGATOR COMPLEX PROTEIN 5
LLU|FUN_038058-T1
LLU|FUN_038059-T1
LLU|FUN_038060-T1CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4
LLU|FUN_038061-T1EF-HAND DOMAIN-CONTAINING PROTEIN D
LLU|FUN_038062-T1CUBILIN-LIKE PROTEIN
LLU|FUN_038063-T1ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN
LLU|FUN_038064-T1NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN
LLU|FUN_038065-T1
LLU|FUN_038066-T1
LLU|FUN_038067-T1CENTROBIN
LLU|FUN_038068-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_038069-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_038070-T1
LLU|FUN_038071-T1
LLU|FUN_038072-T1
LLU|FUN_038073-T1UNCHARACTERIZED
LLU|FUN_038074-T1PHOSPHOLIPID ACYLTRANSFERASE
LLU|FUN_038075-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038076-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE
LLU|FUN_038077-T1ZINC FINGER PROTEIN
LLU|FUN_038078-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038079-T1POLY [ADP-RIBOSE] POLYMERASE
LLU|FUN_038080-T1
LLU|FUN_038081-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038082-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038083-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038084-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038085-T1CHARGED MULTIVESICULAR BODY PROTEIN
LLU|FUN_038086-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_038087-T1POLY [ADP-RIBOSE] POLYMERASE
LLU|FUN_038088-T1CHARGED MULTIVESICULAR BODY PROTEIN
LLU|FUN_038089-T1UBIQUITIN-CONJUGATING ENZYME E2
LLU|FUN_038090-T1
LLU|FUN_038091-T1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED
LLU|FUN_038092-T1
LLU|FUN_038093-T1
LLU|FUN_038094-T1
LLU|FUN_038095-T1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
LLU|FUN_038096-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_038097-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_038098-T1
LLU|FUN_038099-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_038100-T1JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE
LLU|FUN_038101-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 9
LLU|FUN_038102-T1
LLU|FUN_038103-T1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
LLU|FUN_038104-T1
LLU|FUN_038105-T1UNCHARACTERIZED
LLU|FUN_038106-T1SMAD
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