Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_038057-T1 | ELONGATOR COMPLEX PROTEIN 5 |
LLU|FUN_038058-T1 | |
LLU|FUN_038059-T1 | |
LLU|FUN_038060-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 |
LLU|FUN_038061-T1 | EF-HAND DOMAIN-CONTAINING PROTEIN D |
LLU|FUN_038062-T1 | CUBILIN-LIKE PROTEIN |
LLU|FUN_038063-T1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-BINDING PROTEIN |
LLU|FUN_038064-T1 | NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN |
LLU|FUN_038065-T1 | |
LLU|FUN_038066-T1 | |
LLU|FUN_038067-T1 | CENTROBIN |
LLU|FUN_038068-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_038069-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_038070-T1 | |
LLU|FUN_038071-T1 | |
LLU|FUN_038072-T1 | |
LLU|FUN_038073-T1 | UNCHARACTERIZED |
LLU|FUN_038074-T1 | PHOSPHOLIPID ACYLTRANSFERASE |
LLU|FUN_038075-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038076-T1 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
LLU|FUN_038077-T1 | ZINC FINGER PROTEIN |
LLU|FUN_038078-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038079-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_038080-T1 | |
LLU|FUN_038081-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038082-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038083-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038084-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038085-T1 | CHARGED MULTIVESICULAR BODY PROTEIN |
LLU|FUN_038086-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_038087-T1 | POLY [ADP-RIBOSE] POLYMERASE |
LLU|FUN_038088-T1 | CHARGED MULTIVESICULAR BODY PROTEIN |
LLU|FUN_038089-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_038090-T1 | |
LLU|FUN_038091-T1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
LLU|FUN_038092-T1 | |
LLU|FUN_038093-T1 | |
LLU|FUN_038094-T1 | |
LLU|FUN_038095-T1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
LLU|FUN_038096-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_038097-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_038098-T1 | |
LLU|FUN_038099-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_038100-T1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
LLU|FUN_038101-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 9 |
LLU|FUN_038102-T1 | |
LLU|FUN_038103-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_038104-T1 | |
LLU|FUN_038105-T1 | UNCHARACTERIZED |
LLU|FUN_038106-T1 | SMAD |