About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_038208-T1
LLU|FUN_038209-T1
LLU|FUN_038210-T1L-THREONINE 3-DEHYDROGENASE
LLU|FUN_038211-T1
LLU|FUN_038212-T1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
LLU|FUN_038213-T1
LLU|FUN_038214-T1L-THREONINE 3-DEHYDROGENASE
LLU|FUN_038215-T1PROTEIN PHOSPHATASE 2C
LLU|FUN_038216-T1SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
LLU|FUN_038217-T1SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
LLU|FUN_038218-T1
LLU|FUN_038219-T1
LLU|FUN_038220-T1SUCCINATE DEHYDROGENASE
LLU|FUN_038221-T1E3 UBIQUITIN-PROTEIN LIGASE COP1
LLU|FUN_038222-T1ATP-BINDING TRANSPORT PROTEIN-RELATED
LLU|FUN_038223-T1
LLU|FUN_038224-T1
LLU|FUN_038225-T1
LLU|FUN_038226-T1
LLU|FUN_038227-T1
LLU|FUN_038228-T1P25 ALPHA-RELATED
LLU|FUN_038229-T1RING ZINC FINGER PROTEIN
LLU|FUN_038230-T1KNIRPS-RELATED PROTEIN-RELATED
LLU|FUN_038231-T140S RIBOSOMAL PROTEIN S19
LLU|FUN_038232-T1PALMITOYLTRANSFERASE ZDHHC16
LLU|FUN_038233-T1PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1
LLU|FUN_038234-T1MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
LLU|FUN_038235-T1UNCHARACTERIZED
LLU|FUN_038236-T1
LLU|FUN_038237-T1
LLU|FUN_038238-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
LLU|FUN_038239-T1CRUMBS FAMILY MEMBER
LLU|FUN_038240-T1
LLU|FUN_038241-T1
LLU|FUN_038242-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_038243-T1MIR-INTERACTING SAPOSIN-LIKE PROTEIN
LLU|FUN_038244-T1
LLU|FUN_038245-T1
LLU|FUN_038246-T1
LLU|FUN_038247-T1
LLU|FUN_038248-T1PHOSPHOENOLPYRUVATE CARBOXYKINASE
LLU|FUN_038249-T1PROTEIN FAM221A-RELATED
LLU|FUN_038250-T1FAM11A, B PROTEIN
LLU|FUN_038251-T1
LLU|FUN_038252-T1
LLU|FUN_038253-T1-
LLU|FUN_038254-T1BTB DOMAIN-CONTAINING PROTEIN
LLU|FUN_038255-T1-
LLU|FUN_038256-T1
LLU|FUN_038257-T1
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