About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50%31,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI7997599.1DRAB11-RELATED
CAI7997601.1SNARE-ASSOCIATED PROTEIN SNAPIN
CAI7997603.1DNAJ-LIKE-2, ISOFORM A-RELATED
CAI7997605.1DNAJ-LIKE-2, ISOFORM A-RELATED
CAI7997611.1P53 INDUCED PROTEIN
CAI7997607.1P53 INDUCED PROTEIN
CAI7997609.1P53 INDUCED PROTEIN
CAI7997613.1
CAI7997619.1RGPR-RELATED
CAI7997621.1RGPR-RELATED
CAI7997617.1
CAI7997615.1
CAI7997623.1RGPR-RELATED
CAI7997625.1RGPR-RELATED
CAI7997627.1STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
CAI7997629.1STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
CAI7997633.1
CAI7997631.1
CAI7997635.1NUCLEIC ACID-BINDING PROTEINS SUPERFAMILY
CAI7997637.1
CAI7997642.1
CAI7997640.1
CAI7997645.1
CAI7997647.1
CAI7997653.1UNCHARACTERIZED PROTEIN YVCK-RELATED
CAI7997655.1UNCHARACTERIZED PROTEIN YVCK-RELATED
CAI7997657.1GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING
CAI7997659.1SYNTHASE (CCG-9), PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12100)-RELATED
CAI7997661.1SYNTHASE (CCG-9), PUTATIVE (AFU_ORTHOLOGUE AFUA_3G12100)-RELATED
CAI7997663.1ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE
CAI7997665.1HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE
CAI7997667.1ASPARTATE KINASE
CAI7997669.1
CAI7997671.1NITROREDUCTASE MJ1384-RELATED
CAI7997673.1DIHYDRONEOPTERIN ALDOLASE 1-RELATED
CAI7997675.1LYASE BETA SUBUNIT, PUTATIVE (AFU_ORTHOLOGUE AFUA_4G13030)-RELATED
CAI7997677.1DNA POLYMERASE I
CAI7997679.1
CAI7997681.1THIAMINE-PHOSPHATE PYROPHOSPHORYLASE
CAI7997683.1
CAI7997685.1
CAI7997687.1UNCHARACTERIZED
CAI7997689.1VASCULAR CELL ADHESION MOLECULE 1
CAI7997694.1DNAJ HOMOLOG SUBFAMILY B MEMBER 11
CAI7997696.1DNAJ HOMOLOG SUBFAMILY B MEMBER 11
CAI7997698.1DNAJ HOMOLOG SUBFAMILY B MEMBER 11
CAI7997700.1DNAJ HOMOLOG SUBFAMILY B MEMBER 11
CAI7997702.1DNAJ HOMOLOG SUBFAMILY B MEMBER 11
CAI7997704.1OVARIAN CARCINOMA ANTIGEN CA125-RELATED
CAI7997706.1METHYLMALONYL-COA EPIMERASE
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