Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7997712.1 | PHOSPHOTRIESTERASE-RELATED |
| CAI7997714.1 | |
| CAI7997716.1 | MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED |
| CAI7997718.1 | METHYLMALONYL-COA EPIMERASE |
| CAI7997722.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI7997720.1 | AMINOBENZOATE/ANTHRANILATE SYNTHASE |
| CAI7997724.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI7997726.1 | 2-METHYLCITRATE DEHYDRATASE-RELATED |
| CAI7997728.1 | L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
| CAI7997730.1 | |
| CAI7997732.1 | FATTY ACID/PHOSPHOLIPID SYNTHESIS PROTEIN PLSX |
| CAI7997734.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI7997736.1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
| CAI7997738.1 | |
| CAI7997741.1 | RING FINGER DOMAIN-CONTAINING |
| CAI7997743.1 | |
| CAI7997745.1 | |
| CAI7997751.1 | INACTIVE RHOMBOID PROTEIN |
| CAI7997749.1 | INACTIVE RHOMBOID PROTEIN |
| CAI7997747.1 | INACTIVE RHOMBOID PROTEIN |
| CAI7997753.1 | |
| CAI7997755.1 | INACTIVE RHOMBOID PROTEIN |
| CAI7997757.1 | INACTIVE RHOMBOID PROTEIN |
| CAI7997759.1 | |
| CAI7997763.1 | SORTILIN RELATED |
| CAI7997765.1 | SORTILIN RELATED |
| CAI7997767.1 | SORTILIN RELATED |
| CAI7997761.1 | SORTILIN RELATED |
| CAI7997769.1 | UNCHARACTERIZED |
| CAI7997771.1 | |
| CAI7997775.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI7997777.1 | AMIDOHYDROLASE |
| CAI7997779.1 | |
| CAI7997781.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI7997788.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7997790.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7997792.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI7997798.1 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED |
| CAI7997796.1 | OXA1 |
| CAI7997794.1 | OXA1 |
| CAI7997800.1 | OXA1 |
| CAI7997802.1 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED |
| CAI7997804.1 | |
| CAI7997806.1 | |
| CAI7997808.1 | FOUR-JOINTED BOX PROTEIN 1 |
| CAI7997813.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 162 |
| CAI7997811.1 | |
| CAI7997815.1 | |
| CAI7997820.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
| CAI7997822.1 | MITOCHONDRIAL RIBOSOME PROTEIN L39/PROLYL-TRNA LIGASE FAMILY MEMBER |
