About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04202.1
RPACG04203.1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
RPACG04203.2
RPACG04204.1GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
RPACG04204.2
RPACG04205.1
RPACG04206.1PROTEIN CBG17025
RPACG04207.1
RPACG04208.1P-SELECTIN GLYCOPROTEIN LIGAND-1
RPACG04209.1UNCHARACTERIZED
RPACG04210.1SYNAPTIC ADHESION-LIKE MOLECULE SALM
RPACG04211.1
RPACG04212.1SKI ONCOGENE-RELATED
RPACG04213.1
RPACG04214.1IP19862P
RPACG04215.14.1 G PROTEIN
RPACG04216.1SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED
RPACG04217.1
RPACG04218.1
RPACG04219.1PATCHED-RELATED
RPACG04220.1PATCHED-RELATED
RPACG04220.2
RPACG04221.1
RPACG04222.1
RPACG04223.1SOLUTE CARRIER FAMILY 2
RPACG04224.1
RPACG04225.1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
RPACG04226.1
RPACG04227.1HOMEOBOX PROTEIN, PUTATIVE-RELATED
RPACG04228.1
RPACG04229.1
RPACG04230.1-
RPACG04231.1AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
RPACG04232.1
RPACG04232.2
RPACG04233.1TUDOR DOMAIN CONTAINING PROTEIN
RPACG04234.1CHITIN SYNTHASE
RPACG04235.1
RPACG04236.1
RPACG04237.1
RPACG04238.1MYOSIN
RPACG04239.1
RPACG04240.1
RPACG04241.1
RPACG04242.1AGAP011099-PA
RPACG04243.1
RPACG04244.1CHITIN SYNTHASE
RPACG04245.1
RPACG04246.1
RPACG04246.2
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