About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Deep sea, Vent field2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504796%37,037

References
TitleJournalPubmed ID
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG04340.1TUBULIN
RPACG04341.1TUBULIN
RPACG04342.1
RPACG04343.1
RPACG04343.2
RPACG04344.1TOLL-LIKE RECEPTOR
RPACG04344.2
RPACG04345.1
RPACG04345.2
RPACG04345.3
RPACG04346.1
RPACG04347.1
RPACG04348.1
RPACG04349.1GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1-LIKE
RPACG04349.2
RPACG04349.3
RPACG04349.4
RPACG04350.1DET1 HOMOLOG DE-ETIOLATED-1 HOMOLOG
RPACG04351.1
RPACG04352.1DOMON DOMAIN-CONTAINING PROTEIN FRRS1L
RPACG04353.1DOMON DOMAIN-CONTAINING PROTEIN FRRS1L
RPACG04354.1
RPACG04355.1REPETITIVE PROLINE-RICH CELL WALL PROTEIN 1
RPACG04356.1EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
RPACG04357.1FORMIN
RPACG04358.1MONOCARBOXYLATE TRANSPORTER
RPACG04359.1AGAP008648-PA
RPACG04360.1AGAP008648-PA
RPACG04361.1AGAP008648-PA
RPACG04362.1
RPACG04363.1PROTEIN CBG03580
RPACG04364.1
RPACG04364.2
RPACG04364.3
RPACG04365.1
RPACG04366.1
RPACG04367.1
RPACG04368.1
RPACG04369.1
RPACG04370.1
RPACG04371.1N-ACETYLGALACTOSAMINYLTRANSFERASE
RPACG04372.1BETA1,3-GALACTOSYLTRANSFERASE
RPACG04372.2
RPACG04373.1
RPACG04374.1
RPACG04375.1COLLAGEN ALPHA
RPACG04376.1
RPACG04377.1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
RPACG04378.1
RPACG04379.1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
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