About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14543SMAD
Clavulariidae_g14544SMAD
Clavulariidae_g14545TYROSINE-PROTEIN KINASE RECEPTOR
Clavulariidae_g14546ACID PHOSPHATASE-RELATED
Clavulariidae_g14547BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6
Clavulariidae_g14548SMAD
Clavulariidae_g14549GAMMA GLUTAMYL TRANSPEPTIDASE
Clavulariidae_g1455
Clavulariidae_g14550ORGANIC ANION TRANSPORTER
Clavulariidae_g14551
Clavulariidae_g14552DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g14553TRANSCRIPTIONAL REPRESSOR PROTEIN YY
Clavulariidae_g14554PROTEIN SIDEKICK
Clavulariidae_g14555
Clavulariidae_g14556
Clavulariidae_g14557MULTICOPPER OXIDASE-RELATED
Clavulariidae_g14558
Clavulariidae_g14559INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g1456FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Clavulariidae_g14560TRANSPOSASE, PUTATIVE-RELATED
Clavulariidae_g14561NG5
Clavulariidae_g14562CYTOCHROME P450 FAMILY 4
Clavulariidae_g14563FUKUTIN RELATED PROTEIN
Clavulariidae_g14564CYSTEINE PROTEASE FAMILY C1-RELATED
Clavulariidae_g14565NG5
Clavulariidae_g14566NG5
Clavulariidae_g14567NG5
Clavulariidae_g14568PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
Clavulariidae_g14569
Clavulariidae_g1457
Clavulariidae_g14570
Clavulariidae_g14571BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
Clavulariidae_g14572SIGNAL PEPTIDASE COMPLEX CATALYTIC SUBUNIT SEC11
Clavulariidae_g14573
Clavulariidae_g14574BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA
Clavulariidae_g14575SERINE/THREONINE PROTEIN KINASE
Clavulariidae_g14576ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
Clavulariidae_g14577
Clavulariidae_g14578CYTOKINE RECEPTOR
Clavulariidae_g14579CYTOKINE RECEPTOR
Clavulariidae_g1458
Clavulariidae_g14580CYTOKINE RECEPTOR
Clavulariidae_g14581MULTICOPPER OXIDASE-RELATED
Clavulariidae_g14582CYTOKINE RECEPTOR
Clavulariidae_g14583UNCHARACTERIZED
Clavulariidae_g14584MYC PROTO-ONCOGENE
Clavulariidae_g14585DEATH DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14586TRANSMEMBRANE PROTEIN 214
Clavulariidae_g14587SUSHI DOMAIN-CONTAINING PROTEIN 1
Clavulariidae_g14588REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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