About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.

Classification

Animalia Kingdom; Cnidaria (Phylum); Anthozoa (Class); Malacalcyonacea (Order); Clavulariidae (Family); Trachythela (Genus); Trachythela sp. YZ-2020 (Species)

Original Name

Trachythela sp. YZ-2020


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70 356337.557.8835,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g14679SPERMATOGENESIS-ASSOCIATED PROTEIN 48
Clavulariidae_g1468REVERSE TRANSCRIPTASES
Clavulariidae_g14680ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14681
Clavulariidae_g14682UNCHARACTERIZED
Clavulariidae_g14683
Clavulariidae_g14684REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14685
Clavulariidae_g14686MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Clavulariidae_g14687
Clavulariidae_g14688REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14689L-ASPARAGINASE
Clavulariidae_g1469METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED
Clavulariidae_g14690FIBROIN HEAVY CHAIN FIB-H LIKE PROTEIN
Clavulariidae_g14691
Clavulariidae_g14692REVERSE TRANSCRIPTASES
Clavulariidae_g14693
Clavulariidae_g14694REVERSE TRANSCRIPTASES
Clavulariidae_g14695
Clavulariidae_g14696RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2
Clavulariidae_g14697
Clavulariidae_g14698
Clavulariidae_g14699REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g147GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
Clavulariidae_g1470ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14700ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14701ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14702
Clavulariidae_g14703ENDONUCLEASE-RELATED
Clavulariidae_g14704THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14705REVERSE TRANSCRIPTASES
Clavulariidae_g14706THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14707METALLOPROTEASE TIKI
Clavulariidae_g14708
Clavulariidae_g14709COMPLEMENT COMPONENT C6
Clavulariidae_g1471
Clavulariidae_g14710TROPOMYOSIN
Clavulariidae_g14711METHYLTRANSFERASE
Clavulariidae_g14712
Clavulariidae_g14713
Clavulariidae_g14714
Clavulariidae_g14715
Clavulariidae_g14716METHYLTRANSFERASE
Clavulariidae_g14717ATP-DEPENDENT DNA HELICASE
Clavulariidae_g14718EGF-LIKE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g14719ADHESION G-PROTEIN COUPLED RECEPTOR
Clavulariidae_g1472
Clavulariidae_g14720THAP DOMAIN-CONTAINING PROTEIN 6
Clavulariidae_g14721KETOACID-COENZYME A TRANSFERASE
Clavulariidae_g14722KELCH PROTEIN
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