About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8000444.1
CAI8000445.1
CAI8000446.1
CAI8000450.1
CAI8000447.1
CAI8000448.1
CAI8000449.1
CAI8000452.1
CAI8000453.1
CAI8000451.1
CAI8000454.1
CAI8000455.1
CAI8000460.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000462.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000458.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000457.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000456.1DIACYLGLYCEROL KINASE
CAI8000461.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000459.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000463.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000465.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000464.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000466.1SH2 DOMAIN-CONTAINING PROTEIN
CAI8000467.1DESUMOYLATING ISOPEPTIDASE
CAI8000468.1DESUMOYLATING ISOPEPTIDASE
CAI8000469.1
CAI8000470.1
CAI8000471.1
CAI8000472.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8000474.1PROTEIN CBR-CLEC-78
CAI8000473.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8000475.1
CAI8000476.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8000477.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
CAI8000480.1IMPORTIN BETA
CAI8000479.1IMPORTIN BETA
CAI8000478.1IMPORTIN BETA
CAI8000481.1METHIONINE SYNTHASE
CAI8000482.1
CAI8000484.1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
CAI8000483.1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
CAI8000485.1
CAI8000486.1
CAI8000487.1
CAI8000488.1OS01G0253100 PROTEIN
CAI8000489.1BONUS, ISOFORM C-RELATED
CAI8000490.1MYOTUBULARIN-RELATED
CAI8000491.1MYOTUBULARIN-RELATED
CAI8000493.1MYOTUBULARIN-RELATED
CAI8000494.1MYOTUBULARIN-RELATED
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