About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Original Description/Redescription

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Partial Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution/Locality

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

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Gene IDDescription
CAI8000492.1MYOTUBULARIN-RELATED
CAI8000495.1MYOTUBULARIN-RELATED
CAI8000496.1PHOSPHATIDYLINOSITOL TRANSFER PROTEIN
CAI8000497.1LUD_DOM DOMAIN-CONTAINING PROTEIN
CAI8000499.1POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030)
CAI8000498.1POLYSACCHARIDE DEACETYLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_6G05030)
CAI8000500.1PHP DOMAIN PROTEIN
CAI8000501.1HEDGEHOG-INTERACTING PROTEIN
CAI8000502.1
CAI8000503.1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
CAI8000504.12-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE
CAI8000505.1
CAI8000515.1
CAI8000517.1
CAI8000519.1
CAI8000523.1UPF0428 PROTEIN CXORF56
CAI8000521.1UPF0428 PROTEIN CXORF56
CAI8000525.1UPF0428 PROTEIN CXORF56
CAI8000529.1IRON-SULFUR PROTEIN NUBPL
CAI8000527.1IRON-SULFUR PROTEIN NUBPL
CAI8000531.1IRON-SULFUR PROTEIN NUBPL
CAI8000533.1IRON-SULFUR PROTEIN NUBPL
CAI8000535.1IRON-SULFUR PROTEIN NUBPL
CAI8000537.1SUPPRESSOR OF ACTIN MUTATIONS 2/VACUOLAR PROTEIN SORTING 52
CAI8000539.1
CAI8000541.1
CAI8000543.1PRE-MRNA SPLICING FACTOR
CAI8000545.1ANHYDRO-N-ACETYLMURAMIC ACID KINASE
CAI8000547.1
CAI8000549.1ANHYDRO-N-ACETYLMURAMIC ACID KINASE
CAI8000555.13-KETO-STEROID REDUCTASE
CAI8000553.13-KETO-STEROID REDUCTASE
CAI8000551.13-KETO-STEROID REDUCTASE
CAI8000557.13-KETO-STEROID REDUCTASE
CAI8000559.1RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
CAI8000561.1
CAI8000563.1ISLET CELL AUTOANTIGEN 1
CAI8000565.1LD33804P
CAI8000567.1SELENOPROTEIN F
CAI8000569.160S RIBOSOMAL PROTEIN L35
CAI8000571.160S RIBOSOMAL PROTEIN L35
CAI8000575.1UNCHARACTERIZED
CAI8000573.1UNCHARACTERIZED
CAI8000579.1TRANSCRIPTIONAL ADAPTER 1
CAI8000577.1TRANSCRIPTIONAL ADAPTER 1
CAI8000597.1UNCHARACTERIZED
CAI8000599.1UNCHARACTERIZED
CAI8000595.1UNCHARACTERIZED
CAI8000593.1UNCHARACTERIZED
CAI8000591.1UNCHARACTERIZED
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