About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10628REVERSE TRANSCRIPTASES
Clavulariidae_g10629OTU DOMAIN CONTAINING PROTEIN
Clavulariidae_g1063PROTEIN, PUTATIVE-RELATED
Clavulariidae_g10630LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1
Clavulariidae_g10631DIMETHYLARGININE DIMETHYLAMINOHYDROLASE
Clavulariidae_g10632
Clavulariidae_g10633VOLTAGE-GATED POTASSIUM CHANNEL
Clavulariidae_g10634RNA CLEAVAGE STIMULATION FACTOR
Clavulariidae_g10635REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10636REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10637PROTEIN CBG26694
Clavulariidae_g10638LDOC1 RELATED
Clavulariidae_g10639
Clavulariidae_g1064
Clavulariidae_g10640
Clavulariidae_g10641REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10642
Clavulariidae_g10643
Clavulariidae_g10644
Clavulariidae_g10645
Clavulariidae_g10646EXPRESSED PROTEIN
Clavulariidae_g10647
Clavulariidae_g10648
Clavulariidae_g10649RETROTRANSPOSON
Clavulariidae_g1065PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10650
Clavulariidae_g10651ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10652RETROTRANSPOSON
Clavulariidae_g10653RETROTRANSPOSON
Clavulariidae_g10654
Clavulariidae_g10655REVERSE TRANSCRIPTASE
Clavulariidae_g10656PROTEIN CBG26694
Clavulariidae_g10657BLOC-1-RELATED COMPLEX SUBUNIT 5
Clavulariidae_g10658TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g10659TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
Clavulariidae_g1066PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10660
Clavulariidae_g10661REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10662NXPE FAMILY MEMBER
Clavulariidae_g10663FLAVIN MONOAMINE OXIDASE
Clavulariidae_g10664ZINC FINGER PROTEIN
Clavulariidae_g10665RETROTRANSPOSON
Clavulariidae_g10666INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g10667EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10668TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g10669PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1067
Clavulariidae_g10670ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10671
Clavulariidae_g10672PROTEIN CBG26694
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