Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10628 | REVERSE TRANSCRIPTASES |
Clavulariidae_g10629 | OTU DOMAIN CONTAINING PROTEIN |
Clavulariidae_g1063 | PROTEIN, PUTATIVE-RELATED |
Clavulariidae_g10630 | LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1 |
Clavulariidae_g10631 | DIMETHYLARGININE DIMETHYLAMINOHYDROLASE |
Clavulariidae_g10632 | |
Clavulariidae_g10633 | VOLTAGE-GATED POTASSIUM CHANNEL |
Clavulariidae_g10634 | RNA CLEAVAGE STIMULATION FACTOR |
Clavulariidae_g10635 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10636 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10637 | PROTEIN CBG26694 |
Clavulariidae_g10638 | LDOC1 RELATED |
Clavulariidae_g10639 | |
Clavulariidae_g1064 | |
Clavulariidae_g10640 | |
Clavulariidae_g10641 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10642 | |
Clavulariidae_g10643 | |
Clavulariidae_g10644 | |
Clavulariidae_g10645 | |
Clavulariidae_g10646 | EXPRESSED PROTEIN |
Clavulariidae_g10647 | |
Clavulariidae_g10648 | |
Clavulariidae_g10649 | RETROTRANSPOSON |
Clavulariidae_g1065 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10650 | |
Clavulariidae_g10651 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10652 | RETROTRANSPOSON |
Clavulariidae_g10653 | RETROTRANSPOSON |
Clavulariidae_g10654 | |
Clavulariidae_g10655 | REVERSE TRANSCRIPTASE |
Clavulariidae_g10656 | PROTEIN CBG26694 |
Clavulariidae_g10657 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
Clavulariidae_g10658 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g10659 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
Clavulariidae_g1066 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10660 | |
Clavulariidae_g10661 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10662 | NXPE FAMILY MEMBER |
Clavulariidae_g10663 | FLAVIN MONOAMINE OXIDASE |
Clavulariidae_g10664 | ZINC FINGER PROTEIN |
Clavulariidae_g10665 | RETROTRANSPOSON |
Clavulariidae_g10666 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g10667 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10668 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g10669 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1067 | |
Clavulariidae_g10670 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g10671 | |
Clavulariidae_g10672 | PROTEIN CBG26694 |