Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g10673 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g10674 | INTELECTIN |
Clavulariidae_g10675 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g10676 | MULTICOPPER OXIDASE-RELATED |
Clavulariidae_g10677 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g10678 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g10679 | |
Clavulariidae_g1068 | RETROTRANSPOSON |
Clavulariidae_g10680 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g10681 | SI:CH211-108C17.2-RELATED-RELATED |
Clavulariidae_g10682 | SIMILAR TO RIKEN CDNA E130308A19 |
Clavulariidae_g10683 | C5ORF31 |
Clavulariidae_g10684 | PROTEIN CBG26694 |
Clavulariidae_g10685 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g10686 | |
Clavulariidae_g10687 | |
Clavulariidae_g10688 | |
Clavulariidae_g10689 | |
Clavulariidae_g1069 | RETROTRANSPOSON |
Clavulariidae_g10690 | |
Clavulariidae_g10691 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10692 | |
Clavulariidae_g10693 | COLLAGEN ALPHA |
Clavulariidae_g10694 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
Clavulariidae_g10695 | PROTEIN CBG26694 |
Clavulariidae_g10696 | |
Clavulariidae_g10697 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g10698 | |
Clavulariidae_g10699 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g107 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g1070 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10700 | ENDONUCLEASE RELATED |
Clavulariidae_g10701 | |
Clavulariidae_g10702 | RETROTRANSPOSON |
Clavulariidae_g10703 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10704 | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE |
Clavulariidae_g10705 | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE |
Clavulariidae_g10706 | |
Clavulariidae_g10707 | |
Clavulariidae_g10708 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10709 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1071 | |
Clavulariidae_g10710 | |
Clavulariidae_g10711 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g10712 | METHYLTRANSFERASE |
Clavulariidae_g10713 | |
Clavulariidae_g10714 | |
Clavulariidae_g10715 | |
Clavulariidae_g10716 | COLLAGEN ALPHA |
Clavulariidae_g10717 |