About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g10673ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10674INTELECTIN
Clavulariidae_g1067552 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g10676MULTICOPPER OXIDASE-RELATED
Clavulariidae_g10677SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10678SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10679
Clavulariidae_g1068RETROTRANSPOSON
Clavulariidae_g10680DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g10681SI:CH211-108C17.2-RELATED-RELATED
Clavulariidae_g10682SIMILAR TO RIKEN CDNA E130308A19
Clavulariidae_g10683C5ORF31
Clavulariidae_g10684PROTEIN CBG26694
Clavulariidae_g10685ATP-DEPENDENT DNA HELICASE
Clavulariidae_g10686
Clavulariidae_g10687
Clavulariidae_g10688
Clavulariidae_g10689
Clavulariidae_g1069RETROTRANSPOSON
Clavulariidae_g10690
Clavulariidae_g10691REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10692
Clavulariidae_g10693COLLAGEN ALPHA
Clavulariidae_g10694SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED
Clavulariidae_g10695PROTEIN CBG26694
Clavulariidae_g10696
Clavulariidae_g10697CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g10698
Clavulariidae_g10699ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g107REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g1070PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10700ENDONUCLEASE RELATED
Clavulariidae_g10701
Clavulariidae_g10702RETROTRANSPOSON
Clavulariidae_g10703PHD-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g107041,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Clavulariidae_g107051,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE
Clavulariidae_g10706
Clavulariidae_g10707
Clavulariidae_g10708ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10709REVERSE TRANSCRIPTASES
Clavulariidae_g1071
Clavulariidae_g10710
Clavulariidae_g10711ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g10712METHYLTRANSFERASE
Clavulariidae_g10713
Clavulariidae_g10714
Clavulariidae_g10715
Clavulariidae_g10716COLLAGEN ALPHA
Clavulariidae_g10717
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