About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides42136-
Paelopatides42137-
Paelopatides42138CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides42139POL PROTEIN
Paelopatides42140ENDONUCLEASE-RELATED
Paelopatides42141PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides42142-
Paelopatides42143PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides42144-
Paelopatides42145PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides42146TRANSPOSABLE ELEMENT-RELATED
Paelopatides42147-
Paelopatides42148-
Paelopatides42149-
Paelopatides42151-
Paelopatides42152METAL TRANSPORTER CNNM
Paelopatides42153METAL TRANSPORTER CNNM
Paelopatides42154-
Paelopatides42155DDB1- AND CUL4-ASSOCIATED FACTOR 10
Paelopatides42157REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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