About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold2988.12851
mRNA.BJAM.scaffold2988.12852TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3
mRNA.BJAM.scaffold2988.12853ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
mRNA.BJAM.scaffold2988.12854
mRNA.BJAM.scaffold2988.12855ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
mRNA.BJAM.scaffold2989.12856RYBP AND YAF2-RELATED
mRNA.BJAM.scaffold2989.12857NF-KAPPA-B ESSENTIAL MODULATOR
mRNA.BJAM.scaffold299.2226
mRNA.BJAM.scaffold299.2227
mRNA.BJAM.scaffold299.2228PROTEIN STAR
mRNA.BJAM.scaffold299.2229
mRNA.BJAM.scaffold2990.12858UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
mRNA.BJAM.scaffold2991.12859
mRNA.BJAM.scaffold2991.12860UBIQUITIN-PROTEIN LIGASE E3A-RELATED
mRNA.BJAM.scaffold2991.12861
mRNA.BJAM.scaffold2991.12862
mRNA.BJAM.scaffold2991.12863
mRNA.BJAM.scaffold2991.12864DNAJ HOMOLOG SUBFAMILY C MEMBER
mRNA.BJAM.scaffold2991.12865RNA RECOGNITION MOTIF-CONTAINING
mRNA.BJAM.scaffold2991.12866
mRNA.BJAM.scaffold2991.12867RNA RECOGNITION MOTIF-CONTAINING
mRNA.BJAM.scaffold2992.12868
mRNA.BJAM.scaffold2992.12869
mRNA.BJAM.scaffold2993.12870AAA-FAMILY ATPASE
mRNA.BJAM.scaffold2993.12871PALMITOYLTRANSFERASE ZDHHC16
mRNA.BJAM.scaffold2993.12872
mRNA.BJAM.scaffold2994.12873LONG-CHAIN-FATTY-ACID--COA LIGASE
mRNA.BJAM.scaffold2995.12874PROLINE-RICH PROTEIN PRCC
mRNA.BJAM.scaffold2995.12875LEUCINE AMINOPEPTIDASE-RELATED
mRNA.BJAM.scaffold2995.12876SPHINGOMYELIN PHOSPHODIESTERASE
mRNA.BJAM.scaffold2995.12877
mRNA.BJAM.scaffold2997.12878ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
mRNA.BJAM.scaffold2997.12879FAS-ASSOCIATED PROTEIN
mRNA.BJAM.scaffold2997.12880CATION-TRANSPORTING ATPASE-RELATED
mRNA.BJAM.scaffold2997.12881CATION-TRANSPORTING ATPASE-RELATED
mRNA.BJAM.scaffold2997.12882GLUTATHIONE S TRANSFERASE D10, ISOFORM A-RELATED
mRNA.BJAM.scaffold2998.12884ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER
mRNA.BJAM.scaffold2998.12885
mRNA.BJAM.scaffold2999.12886
mRNA.BJAM.scaffold3.6SIDESTEP PROTEIN
mRNA.BJAM.scaffold3.7SIDESTEP PROTEIN
mRNA.BJAM.scaffold3.8
mRNA.BJAM.scaffold3.9
mRNA.BJAM.scaffold30.231
mRNA.BJAM.scaffold30.232DEFECTIVE PROBOSCIS EXTENSION RESPONSE DPR -RELATED
mRNA.BJAM.scaffold300.2230
mRNA.BJAM.scaffold300.2231HEDGEHOG
mRNA.BJAM.scaffold300.2232SD08549P
mRNA.BJAM.scaffold300.2233
mRNA.BJAM.scaffold300.2234SOLUTE CARRIER FAMILY 22 MEMBER
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