About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold3043.12971WD-40 REPEAT PROTEIN
mRNA.BJAM.scaffold3043.12972BTB DOMAIN TRANSCRIPTION FACTOR
mRNA.BJAM.scaffold3045.12973MOLTING PROTEIN MLT-4
mRNA.BJAM.scaffold3045.12974
mRNA.BJAM.scaffold3045.12975
mRNA.BJAM.scaffold3048.12976PLEXIN
mRNA.BJAM.scaffold3048.12977PLEXIN
mRNA.BJAM.scaffold3048.12978PLEXIN
mRNA.BJAM.scaffold305.2258
mRNA.BJAM.scaffold305.2259
mRNA.BJAM.scaffold305.2260
mRNA.BJAM.scaffold305.2261GABA-B RECEPTOR
mRNA.BJAM.scaffold3050.12979PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
mRNA.BJAM.scaffold3050.12980PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
mRNA.BJAM.scaffold3050.12981TUBULIN
mRNA.BJAM.scaffold3050.12982OS01G0282866 PROTEIN
mRNA.BJAM.scaffold3050.12983
mRNA.BJAM.scaffold3050.12984ACYL-COA DEHYDROGENASE
mRNA.BJAM.scaffold3050.12985NADH-CYTOCHROME B5 REDUCTASE
mRNA.BJAM.scaffold3050.12986
mRNA.BJAM.scaffold3050.12989
mRNA.BJAM.scaffold3050.12990ACYL-COA DEHYDROGENASE
mRNA.BJAM.scaffold3052.12991COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
mRNA.BJAM.scaffold3054.12992
mRNA.BJAM.scaffold3055.12993UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
mRNA.BJAM.scaffold3055.12994ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13
mRNA.BJAM.scaffold3055.12995CALCIUM-REGULATED HEAT STABLE PROTEIN CRHSP-24-RELATED
mRNA.BJAM.scaffold3056.12996GATA ZINC FINGER DOMAIN-CONTAINING
mRNA.BJAM.scaffold3057.12997CELL DIVISION CYCLE-ASSOCIATED PROTEIN 3
mRNA.BJAM.scaffold3057.12998PEROXISOMAL BIOGENESIS FACTOR 3
mRNA.BJAM.scaffold3057.12999
mRNA.BJAM.scaffold3059.13000
mRNA.BJAM.scaffold3059.13001
mRNA.BJAM.scaffold3059.13002
mRNA.BJAM.scaffold3059.13003
mRNA.BJAM.scaffold3059.13004AGAP008221-PA
mRNA.BJAM.scaffold3059.13005AGAP008221-PA
mRNA.BJAM.scaffold306.2262
mRNA.BJAM.scaffold306.2263ALZHEIMER'S DISEASE BETA-AMYLOID RELATED
mRNA.BJAM.scaffold306.2264
mRNA.BJAM.scaffold306.2265SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER
mRNA.BJAM.scaffold3061.13006ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10
mRNA.BJAM.scaffold3061.13007
mRNA.BJAM.scaffold3061.13008
mRNA.BJAM.scaffold3062.13009GLUTAMINE-TRNA LIGASE
mRNA.BJAM.scaffold3062.13010PNAS-RELATED
mRNA.BJAM.scaffold3062.13011ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED
mRNA.BJAM.scaffold3062.13012
mRNA.BJAM.scaffold3062.13013
mRNA.BJAM.scaffold3062.13014
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