About Bathynomus jamesi

Bathynomus jamesi is widely distributed across different environments including the deep-sea and as such are a useful model for studying adaptation, migration, and speciation. They have larger body size than their shallow water relatives and have large stomachs and fat bodies presumably to store organic reserves. To adapt to the benthic environment, they adopt a burrowing behavior . They have developed an oversized stomach, which can take approximately 2/3 of the whole body cavity when it fills up with food. In addition, they are well known for their extremely long fasting state, which should be the longest record to date. Larger animals usually have greater absolute energy requirements.

Classification

Animalia (Kingdom); Arthropoda (Phylum); Crustacea (Subphylum); Multicrustacea (Superclass); Malacostraca (Class); Eumalacostraca (Subclass); Peracarida (Superorder); Isopoda (Order); Cymothoida (Suborder); Cymothooidea (Superfamily); Cirolanidae (Family); Bathynomus (Genus); Bathynomus jamesi (Species)

Original Name

Bathynomus jamesi Kou, Chen & Li in Kou, Q., Chen, J., Li, X., He, L. & Wang, Y., 2017

Original Description/Redescription

1. Kou Q, Chen J, Li X, et al. New species of the giant deep‐sea isopod genus Bathynomus (Crustacea, Isopoda, Cirolanidae) from Hainan Island, South China Sea[J]. Integrative zoology, 2017, 12(4): 283-291. (Kou et al., 2017)
2. Huang M C, Kawai T, Bruce N L. A new species of Bathynomus Milne-Edwards, 1879 (Isopoda: Cirolanidae) from the southern Gulf of Mexico with a redescription of Bathynomus jamesi Kou, Chen and Li, 2017 from off Pratas Island, Taiwan[J]. Journal of Natural History, 2022, 56(13-16): 885-921. (Huang et al., 2022)

Partial Description

Holotype, 1 immature female (to-tal length [TL] 114 mm). Pleotelson with 11 or 13 short, straightspines; central spine not bifid. Uropod with endopodand exopod distolateral corner slightly produced. Cly-peus lateral margins concave, narrowly rounded apical-ly. Antennal flagellum extending to within pereonite 3. Body suboval, total length(114 mm) approximately 2.2 times as long as maximalwidth (53 mm)

Etymology

The species is named after Dr James K.Lowry in recognition of his great contribution to thecrustacean taxonomy

Distribution/Locality

Gulf of Aden, north-western IndianOcean and northern South China Sea, western PacificOcean at a depth of 563–898 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Bathynomus jamesiArthropoda-Hydrothermal vent898near Hainan Island, in the northern South China Sea (17° 46.845′ N, 110° 38.217′ E)1955234

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM2301448v15.89GbContig2022JAJOZX01Institute of Oceanology, Chinese Academy of SciencesPRJNA77607694.80 586.537.2885.3223,221

References
TitleJournalPubmed ID
Genome of a giant isopod, Bathynomus jamesi, provides insights into body size evolution and adaptation to deep-sea environmentBMC Biology35562825

Gene Information

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Gene IDDescription
mRNA.BJAM.scaffold302.2248
mRNA.BJAM.scaffold3021.12927TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
mRNA.BJAM.scaffold3021.12928
mRNA.BJAM.scaffold3021.12929FORKHEAD BOX PROTEIN O
mRNA.BJAM.scaffold3021.12930FORKHEAD BOX PROTEIN O
mRNA.BJAM.scaffold3023.12931SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT
mRNA.BJAM.scaffold3026.12932OS02G0815200 PROTEIN
mRNA.BJAM.scaffold3026.12933
mRNA.BJAM.scaffold3027.12934SHC (SRC HOMOLOGY DOMAIN C-TERMINAL) ADAPTOR HOMOLOG
mRNA.BJAM.scaffold3028.12935UNCHARACTERIZED
mRNA.BJAM.scaffold3028.129364F2 CELL-SURFACE ANTIGEN HEAVY CHAIN
mRNA.BJAM.scaffold3028.129374F2 CELL-SURFACE ANTIGEN HEAVY CHAIN
mRNA.BJAM.scaffold303.2249TRANSMEMBRANE PROTEASE SERINE
mRNA.BJAM.scaffold303.2250
mRNA.BJAM.scaffold303.2251RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
mRNA.BJAM.scaffold303.2252GC-RICH SEQUENCE DNA-BINDING FACTOR
mRNA.BJAM.scaffold303.2253GC-RICH SEQUENCE DNA-BINDING FACTOR
mRNA.BJAM.scaffold303.2254
mRNA.BJAM.scaffold303.2255
mRNA.BJAM.scaffold303.2256
mRNA.BJAM.scaffold3031.12938DELTA ADAPTIN-RELATED
mRNA.BJAM.scaffold3031.12939DELTA ADAPTIN-RELATED
mRNA.BJAM.scaffold3032.12940V-TYPE ATP SYNTHASE SUBUNIT D
mRNA.BJAM.scaffold3033.12941PIKACHURIN-LIKE PROTEIN
mRNA.BJAM.scaffold3033.12942PIKACHURIN-LIKE PROTEIN
mRNA.BJAM.scaffold3033.12943CONTACTIN 5
mRNA.BJAM.scaffold3033.12944LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
mRNA.BJAM.scaffold3033.12945CYTIDYLYLTRANSFERASE
mRNA.BJAM.scaffold3034.12946SPLICING FACTOR 3B SUBUNIT 5
mRNA.BJAM.scaffold3034.12947
mRNA.BJAM.scaffold3036.12948ELL-ASSOCIATED FACTOR EAF
mRNA.BJAM.scaffold3036.12949
mRNA.BJAM.scaffold3037.12951TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 4 TMCO4
mRNA.BJAM.scaffold3037.12952
mRNA.BJAM.scaffold3038.12954CELLULAR TUMOR ANTIGEN P53
mRNA.BJAM.scaffold3038.12955
mRNA.BJAM.scaffold3039.12956NUCLEOSIDE DIPHOSPHATE KINASE
mRNA.BJAM.scaffold3039.12957
mRNA.BJAM.scaffold3039.12958
mRNA.BJAM.scaffold3039.12959TRIFUNCTIONAL ENZYME SUBUNIT ALPHA
mRNA.BJAM.scaffold3040.12960CALCIUM RELEASE-ACTIVATED CALCIUM CHANNEL PROTEIN 1
mRNA.BJAM.scaffold3040.12961MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
mRNA.BJAM.scaffold3040.12962FK506-BINDING PROTEIN 15
mRNA.BJAM.scaffold3040.12963
mRNA.BJAM.scaffold3041.12964CXC DOMAIN-CONTAINING PROTEIN-RELATED
mRNA.BJAM.scaffold3041.12965
mRNA.BJAM.scaffold3043.12966SPERMINE SYNTHASE
mRNA.BJAM.scaffold3043.12967SPERMINE SYNTHASE
mRNA.BJAM.scaffold3043.12969SPERMINE SYNTHASE
mRNA.BJAM.scaffold3043.12970SOLUTE CARRIER FAMILY 17
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