About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS10901ABHYDROLASE DOMAIN-CONTAINING PROTEIN
HS10902CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE
HS10903POTASSIUM CHANNEL, SUBFAMILY K
HS10904
HS10905SORTING NEXIN
HS10906DOPAMINE BETA HYDROXYLASE RELATED
HS10907RIBOSOMAL PROTEIN S6 KINASE
HS10908HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26
HS10909HISTONE-LYSINE N-METHYLTRANSFERASE SMYD
HS10910TYROSINE-PROTEIN PHOSPHATASE
HS10911PRO-OPIOMELANOCORTIN
HS10912UNCHARACTERIZED
HS10913OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
HS10914ADENYLATE CYCLASE TYPE 1
HS10915EPM2A-INTERACTING PROTEIN 1
HS10916DNA LIGASE
HS10917LIN-9
HS10918
HS10919LD35087P
HS10920NANCE-HORAN SYNDROME PROTEIN
HS10921HEME-BINDING PROTEIN-RELATED
HS10922UNCHARACTERIZED
HS10923TESTIS DEVELOPMENT-RELATED PROTEIN-RELATED
HS10924LD30288P
HS10925AGAP005440-PA
HS10926LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE
HS10927ALK AND LTK LIGAND 2-RELATED
HS10928
HS10929STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
HS10930SI:DKEY-126G1.9-RELATED
HS10931NUCLEOTIDE KINASE
HS10932NUCLEOTIDE KINASE
HS10933POLYPHOSPHOINOSITIDE PHOSPHATASE
HS10934G-PROTEIN COUPLED RECEPTOR
HS10935COILED-COIL DOMAIN-CONTAINING PROTEIN 167
HS10936KINESIN-LIKE PROTEIN KLP-3
HS10937WASP-1
HS10938PRE-MRNA-PROCESSING FACTOR 17
HS10939METHYLTRANSFERASE-LIKE PROTEIN 24
HS10940SOLUTE CARRIER FAMILY 22 MEMBER
HS10941HEPARAN SULFATE 2-O-SULFOTRANSFERASE
HS10942SAM-DOMAIN, SH3 AND NUCLEAR LOCALIZATION SIGNALS PROTEIN RELATED
HS10943LETHAL 2 GIANT LARVAE PROTEIN
HS10944ANDROGLOBIN
HS10945RAB FAMILY
HS10946METABOTROPIC GLUTAMATE RECEPTOR
HS10947PROTEIN CBG16327
HS10948LIPOXYGENASE
HS10949LIPOXYGENASE
HS10950LAFORIN
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