About Pseudoliparis swirei

The Mariana snailfish or Mariana hadal snailfish Pseudoliparis swirei is a species of snailfish found in the Mariana Trench in the western Pacific Ocean. It is known from a depth range of 6,198–8,076 m,which is possibly the record for a fish caught on the seafloor. Various anatomical, physiological, molecular and genetic adaptions help this species survive in such depths. It is abundant in their deep-sea habitat and has several unusual adaptions for its dark and high pressure habitat, including transparent skin that lacks pigment, certain organs and eggs that are enlarged, the muscles are thinner, the ossification of its bones (notably the skull) is incomplete.

Classification

Animalia (Kingdom); Chordata (Phylum); Vertebrata (Subphylum); Gnathostomata (Infraphylum); Osteichthyes (Parvphylum); Actinopterygii (Gigaclass); Actinopteri (Superclass); Teleostei (Class); Perciformes (Order); Cottoidei (Suborder); Liparidae (Family); Pseudoliparis (Genus); Pseudoliparis swirei (Species)

Original Name

Pseudoliparis swirei Gerringer & Linley, 2017

Original Description/Redescription

1. Gerringer M E, Linley T D, Jamieson A J, et al. Pseudoliparis swirei sp. nov.: a newly-discovered hadal snailfish (Scorpaeniformes: Liparidae) from the Mariana Trench[J]. Zootaxa, 2017, 4358(1): 161–177-161–177. (Gerringer et al., 2017)

Partial Description

Holotype is immature. Ripe females had eggs up to 9.4 mm diameter, among the largest teleost eggs recorded, 0.4 mm smaller than the largest record. The eggs were unsorted within gonad, with the largest eggs free and interspersed within a matrix of smaller eggs. No developmental structures were visible within even the largest eggs. Two distinct size classes of eggs present with up to 23 large eggs (>5 mm) and up to 851 small eggs of less than half the diameter of the larger size class. There were rarely intermediate stages (Figure 7). Individuals with only small eggs had maximum egg sizes ranging from 0.7 to 1.4 mm. Genital papilla visible in freshly collected males, oriented anteriorly

Etymology

The Mariana Trench famously houses the ocean’s deepest point, at Challenger Deep, named for the HMS Challenger expedition which discovered the trench in 1875. Their deepest sounding of 8,184 m, then the greatest known ocean depth, was christened Swire Deep after Herbert Swire, the ship’s First Navigating Sublieutenant (Corfield 2003). We name this fish in his honor, in acknowledgment and gratitude of the crew members that have supported oceanographic research throughout history

Distribution/Locality

Known only from the Mariana Trench at capture depths from 6,898–7,966 m, individuals likely this species were recognized in video at depths 6,198–8,098 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Pseudoliparis swireiChordatahadal snailfishDeep sea7,254the Mariana Trench (142°26′E, 11°07′N)2059687

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
NWPU_hadal_v1626.4MbChromosome2023JANBZZ01Northwestern Polytechnical UniversityPRJNA85295196.00 25,738/4,21944-21,161

References
TitleJournalPubmed ID
Chromosome-level genome assembly of hadal snailfish reveals mechanisms of deep-sea adaptation in vertebratesElife38134226

Gene Information

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Gene IDDescription
HS11001SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS11002SYNAPTIC ADHESION-LIKE MOLECULE SALM
HS11003MYOTONIC DYSTROPHY S/T KINASE-RELATED
HS11004
HS11005RETINOIC ACID-INDUCED PROTEIN 2
HS11006
HS11007ALCOHOL DEHYDROGENASE RELATED
HS11008BETA/GAMMA CRYSTALLIN
HS11009MELANOCORTIN-2 RECEPTOR ACCESSORY PROTEIN 2
HS11010-
HS11011
HS11012CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
HS11013IONOTROPIC GLUTAMATE RECEPTOR
HS11014PROTEIN LIN-28
HS11015PROLYL ENDOPEPTIDASE
HS11016PR DOMAIN ZINC FINGER PROTEIN
HS11017XK-RELATED PROTEIN
HS11018TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN
HS11019EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
HS11020PROTEIN EVA-1 HOMOLOG B-RELATED
HS11021PROTEIN EVA-1
HS11022RIBOSOMAL PROTEIN L19
HS11023MYC PROTO-ONCOGENE
HS11024
HS11025ATP SYNTHASE GAMMA-RELATED
HS11026ENHANCER OF RUDIMENTARY ERH
HS11027
HS11028FI17866P1
HS11029SI:DKEY-19B23.11-RELATED
HS11030SI:DKEY-19B23.11-RELATED
HS11031SI:DKEY-19B23.11-RELATED
HS11032SI:DKEY-19B23.11-RELATED
HS11033SI:DKEY-19B23.11-RELATED
HS11034VOLTAGE-GATED POTASSIUM CHANNEL
HS11035REST COREPRESSOR COREST PROTEIN-RELATED
HS11036CASEIN KINASE-RELATED
HS11037PROTEIN CHURCHILL
HS11038ZINC FINGER PROTEIN 106
HS11039CALPAIN
HS11040SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED
HS11041MACOILIN
HS11042AMMONIUM TRANSPORTER
HS11043
HS11044SI:CH211-22I13.2
HS11045RENTINAL DEGENERATION 3-LIKE
HS11046FI23527P1
HS11047CAMK FAMILY PROTEIN KINASE
HS11048
HS110491-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED
HS11050C1ORF73 PROTEIN
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